NONHSAT023265

From LncRNAWiki
Revision as of 20:41, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT023265

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2591 nt

Genomic location

chr11+:77861777..77864367

Exon number

1

Exons

77861777..77864367

Genome context

Sequence
000001 cccaaagtgc tgagattaca gtcatgagct actgtgccca gccCAAATTC CTCTTTATCA GCATCAGATC ATATCAATAT 000080
000081 CAATTTTATA AAGACCATTA ATATCAACCA GGAGAAGGAT GAAAGCAAAA TGTTCTAAGA GCAAAGGGAC TGCTGATTAT 000160
000161 CATCAAGTGA CCCTATTTCA CAGGAAGAAA ATGTGGATGA CATTTTATGA CCAACAGCAT TGTTTATTTA ACCTTGGAGC 000240
000241 ACAATAGAGA AAAACTTTTG ACTCCAACCC CCAGTCCCTG AAGGCAGAAG TCTGAAATAC CCTCTCAATT CTGTTTATGG 000320
000321 CCTTAAAGCA TTtgtcttag cctatattct ccccaaagca gggcctgaga caaaggctta tgtgtgagta gtttaatttg 000400
000401 ctgtgctgat ctcaggaagc aggagctatg cttgcagaaa atgaaatagg gagtgcaaat ataaggataa gatattaact 000480
000481 actactgagg acaactgatt actcaagcat gggagacctt ctgagagacc atataggatg catttaagga ctgtcttgct 000560
000561 caggggaaga gagggagaaa aggttatcca tcagtttccc tctcccattg gtcaagactg gccctaggga acatttatgt 000640
000641 ttcctgtaaa tgagtgctaa gtggactccc acagacatca ggcatggcag ctcaaagaga ctggaaggca gaaaatgaaa 000720
000721 gacatgagac gggcctgagg ccaggcattt tcaggttaca tcttcatgaa gatggtcact gctgcacaat ggctggaata 000800
000801 agaggtgaga ctgacaagat atgaagtggg acatgagagg tgtttgacaG AGTCCAACCC TTGCACCATT CAAGCCCACT 000880
000881 TAAAATGCCC TTGTGTAAAT TTAATTTGTC ATACGGTCGT CTTCAGTATG GCAGTTGGCT GCGTTCTCTG CAAACACTTG 000960
000961 ATAATCCAAG CAAATTAGTG AAACAAGTTA TAACACTTGC TGCTACAGTT GATCCCAAAG CTGTAATTGA TATTCATTAT 001040
001041 CTGCTTCTTC TACCACTCAA TCTAGATTTC TCTTATTCTC ATCTAGCACT TTGGCTGGCC TGGATTTCTT GCTTGGTGGT 001120
001121 GGGACTATGA CTGTCCCTGA AGTCCTTATG ATTGCCTTAC CCTTGATATG ATCATGATTA CTACAAATAG CCTGTTCATC 001200
001201 ATTACCACTG GATTTGTTCC TGAGCTGAca cttaactgag ccttaccaga acattccacc atcatctgcc agggtctgtt 001280
001281 ttattgcaga agccatagag gtgatctgaa tagagatata atgggcataa acaggcttgt gtcctctaag tctgttctga 001360
001361 tggtgttaat ctctgcagtt ctttctggga tgcaatattg cttctactga tgggggcagt gaagtgtctg ggtaacttca 001440
001441 ggggcttcca cttggccctt tctactacag actcttactc ggctggatgt ggtggctcac gcctgtaatt ccagcacttt 001520
001521 gggaggccga ggcgggcgga tcacttgagg tcaggagttc gagatcagcc tggccaatgt ggtgaaaccc catctctact 001600
001601 aacattagag actacaaaaa ttagccgtgt gtggtggtgg catgcctgta attccagcta ctcaggaggc tgaggcaggg 001680
001681 gaatcgcttg aacccaggag gtggaggttg cagtgagccg ggatcaagcc attgtactcc agcctgggtg acagaacaag 001760
001761 actctgtctc aaaaaaaaaa aagattctta ctcctcaggt cagaaaaaca acacaagaat tctaatatct gctaaatata 001840
001841 tatctgctga tctctacttc cagaaactgg ggaattaacc acagggtggg tccgtgaatg catagaacca atgtgaaatg 001920
001921 CATttgggct agaagtcatt ttatcacttg gctttcatca ttcaaattca tcatctaaaa atggggggct gcatgcggtg 002000
002001 cctcacacct gtaattccag cactttggga ggctgaggtg ggtggatcat ctgaggtgag gagttcaaga ctcatcctgg 002080
002081 cccacaatgc aaaacccgtc tgcactaaaa atacaaacat tagccaggcg tggtggcggg cacttgtagt cccagctact 002160
002161 cgagaggctg aggcgggaga atcacttgaa cccaggagat ggaggttgca gtcagccgag attgtgccac ttcactccag 002240
002241 cctgggtgac ggagcgagac tccCTGTCaa taaataaata aataaataaa taatgggggt gacagttctt atcacttacg 002320
002321 ggttttgtga ggattaaatg gtatgtgtaa acaccaaaac agctgttgac acacagtagg tgttcaagaa atagtaCTGT 002400
002401 GATAGGACAT TTTTCTACAG AAATCCTGAC TCCCGCTTTG GATGATTTCC TTGAATCCTG AGTTTTTTGA ATTCCCCAAA 002480
002481 TTGTCCTCCa tggtactaca tagtcattaa gaacaaagat ttaggagcca gatcattggg gttttgaatc ttggctctac 002560
002561 cagtcactag ctgttggatg ttgggcaagt g
[back to top]

Predicted Small Protein

Name NONHSAT023265_smProtein_884:1129
Length 82
Molecular weight 9172.8192
Aromaticity 0.111111111111
Instability index 48.5962962963
Isoelectric point 8.68572998047
Runs 12
Runs residual 0.00596844084703
Runs probability 0.0518165224047
Amino acid sequence MPLCKFNLSYGRLQYGSWLRSLQTLDNPSKLVKQVITLAATVDPKAVIDIHYLLLLPLNL
DFSYSHLALWLAWISCLVVGL
Secondary structure LLLEEELLLLLLLLHHHHHHHHHHLLLHHHHHHHHHHHHLLLLLLLEEHHHHHHHLLLLL
LLLHHHHHHHHHHHHHHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL
LHHHHHHHHHHHHHHHHHHLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooo
oTTTTTTTTTTTTTTTTTTii