NONHSAT023265
Revision as of 20:41, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT023265 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2591 nt |
Genomic location |
chr11+:77861777..77864367 |
Exon number |
1 |
Exons |
77861777..77864367 |
Genome context |
|
Sequence |
000001 cccaaagtgc tgagattaca gtcatgagct actgtgccca gccCAAATTC CTCTTTATCA GCATCAGATC ATATCAATAT 000080
000081 CAATTTTATA AAGACCATTA ATATCAACCA GGAGAAGGAT GAAAGCAAAA TGTTCTAAGA GCAAAGGGAC TGCTGATTAT 000160 000161 CATCAAGTGA CCCTATTTCA CAGGAAGAAA ATGTGGATGA CATTTTATGA CCAACAGCAT TGTTTATTTA ACCTTGGAGC 000240 000241 ACAATAGAGA AAAACTTTTG ACTCCAACCC CCAGTCCCTG AAGGCAGAAG TCTGAAATAC CCTCTCAATT CTGTTTATGG 000320 000321 CCTTAAAGCA TTtgtcttag cctatattct ccccaaagca gggcctgaga caaaggctta tgtgtgagta gtttaatttg 000400 000401 ctgtgctgat ctcaggaagc aggagctatg cttgcagaaa atgaaatagg gagtgcaaat ataaggataa gatattaact 000480 000481 actactgagg acaactgatt actcaagcat gggagacctt ctgagagacc atataggatg catttaagga ctgtcttgct 000560 000561 caggggaaga gagggagaaa aggttatcca tcagtttccc tctcccattg gtcaagactg gccctaggga acatttatgt 000640 000641 ttcctgtaaa tgagtgctaa gtggactccc acagacatca ggcatggcag ctcaaagaga ctggaaggca gaaaatgaaa 000720 000721 gacatgagac gggcctgagg ccaggcattt tcaggttaca tcttcatgaa gatggtcact gctgcacaat ggctggaata 000800 000801 agaggtgaga ctgacaagat atgaagtggg acatgagagg tgtttgacaG AGTCCAACCC TTGCACCATT CAAGCCCACT 000880 000881 TAAAATGCCC TTGTGTAAAT TTAATTTGTC ATACGGTCGT CTTCAGTATG GCAGTTGGCT GCGTTCTCTG CAAACACTTG 000960 000961 ATAATCCAAG CAAATTAGTG AAACAAGTTA TAACACTTGC TGCTACAGTT GATCCCAAAG CTGTAATTGA TATTCATTAT 001040 001041 CTGCTTCTTC TACCACTCAA TCTAGATTTC TCTTATTCTC ATCTAGCACT TTGGCTGGCC TGGATTTCTT GCTTGGTGGT 001120 001121 GGGACTATGA CTGTCCCTGA AGTCCTTATG ATTGCCTTAC CCTTGATATG ATCATGATTA CTACAAATAG CCTGTTCATC 001200 001201 ATTACCACTG GATTTGTTCC TGAGCTGAca cttaactgag ccttaccaga acattccacc atcatctgcc agggtctgtt 001280 001281 ttattgcaga agccatagag gtgatctgaa tagagatata atgggcataa acaggcttgt gtcctctaag tctgttctga 001360 001361 tggtgttaat ctctgcagtt ctttctggga tgcaatattg cttctactga tgggggcagt gaagtgtctg ggtaacttca 001440 001441 ggggcttcca cttggccctt tctactacag actcttactc ggctggatgt ggtggctcac gcctgtaatt ccagcacttt 001520 001521 gggaggccga ggcgggcgga tcacttgagg tcaggagttc gagatcagcc tggccaatgt ggtgaaaccc catctctact 001600 001601 aacattagag actacaaaaa ttagccgtgt gtggtggtgg catgcctgta attccagcta ctcaggaggc tgaggcaggg 001680 001681 gaatcgcttg aacccaggag gtggaggttg cagtgagccg ggatcaagcc attgtactcc agcctgggtg acagaacaag 001760 001761 actctgtctc aaaaaaaaaa aagattctta ctcctcaggt cagaaaaaca acacaagaat tctaatatct gctaaatata 001840 001841 tatctgctga tctctacttc cagaaactgg ggaattaacc acagggtggg tccgtgaatg catagaacca atgtgaaatg 001920 001921 CATttgggct agaagtcatt ttatcacttg gctttcatca ttcaaattca tcatctaaaa atggggggct gcatgcggtg 002000 002001 cctcacacct gtaattccag cactttggga ggctgaggtg ggtggatcat ctgaggtgag gagttcaaga ctcatcctgg 002080 002081 cccacaatgc aaaacccgtc tgcactaaaa atacaaacat tagccaggcg tggtggcggg cacttgtagt cccagctact 002160 002161 cgagaggctg aggcgggaga atcacttgaa cccaggagat ggaggttgca gtcagccgag attgtgccac ttcactccag 002240 002241 cctgggtgac ggagcgagac tccCTGTCaa taaataaata aataaataaa taatgggggt gacagttctt atcacttacg 002320 002321 ggttttgtga ggattaaatg gtatgtgtaa acaccaaaac agctgttgac acacagtagg tgttcaagaa atagtaCTGT 002400 002401 GATAGGACAT TTTTCTACAG AAATCCTGAC TCCCGCTTTG GATGATTTCC TTGAATCCTG AGTTTTTTGA ATTCCCCAAA 002480 002481 TTGTCCTCCa tggtactaca tagtcattaa gaacaaagat ttaggagcca gatcattggg gttttgaatc ttggctctac 002560 002561 cagtcactag ctgttggatg ttgggcaagt g |
Predicted Small Protein
Name | NONHSAT023265_smProtein_884:1129 |
Length | 82 |
Molecular weight | 9172.8192 |
Aromaticity | 0.111111111111 |
Instability index | 48.5962962963 |
Isoelectric point | 8.68572998047 |
Runs | 12 |
Runs residual | 0.00596844084703 |
Runs probability | 0.0518165224047 |
Amino acid sequence | MPLCKFNLSYGRLQYGSWLRSLQTLDNPSKLVKQVITLAATVDPKAVIDIHYLLLLPLNL DFSYSHLALWLAWISCLVVGL |
Secondary structure | LLLEEELLLLLLLLHHHHHHHHHHLLLHHHHHHHHHHHHLLLLLLLEEHHHHHHHLLLLL LLLHHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL LHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooo oTTTTTTTTTTTTTTTTTTii |