NONHSAT023785
Revision as of 20:43, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023785 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2001 nt |
Genomic location |
chr11-:95512000..95522946 |
Exon number |
8 |
Exons |
95512000..95512118,95512242..95512299,95512771..95512851,95513043..95513090,95516229..95516428,95519283..95519438,95520788..95520842,95521663..95522946 |
Genome context |
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Sequence |
000001 GGATCCACGG CCGCACAGCT AAACAGCAAC CCCCTACCCG CTTCGTCTCC CTCCGCCGCT ATCGGGGCCT AAGCGGGAGC 000080
000081 GGCTGGCACG GCGTCACTGG GTgggctggg gcggaagtgg aggcggaggg agacggtggc gtcgtccgcg gggccctggg 000160 000161 ctctcgcggc gaggccctgg tgggcgcgag gcagggggag ggggaggagg aggagcccgc ggcccgggcg gcggcggCTC 000240 000241 TCGGGTTCTC CGTAGGGCCC CGCCTCGGAG CGGGCGGCGG CGGAGGAGGA GACTGAGGAG CAGGATGGCG GCCTCGGCCC 000320 000321 TGTACGCCTG CACCAAGTGT ACCCAGCGTT ATCCTTTCGA GGAGCTCTCC CAGGGCCAGC AGCTCTGCAA GGTCCGTGGG 000400 000401 CTCCGGGAGG CGGGCGGGAT GGGTGTCCTC GGCCGTAGCC GGAGGGGGCC GGGTAGCCGC TGCACTGCAG CCCCTCTTCG 000480 000481 CCGGCGCCTC AGGGGTTTGG GAGTCTGGAG CCCTCGCCTC CCCACTCGGG GACCCCTTTT TCTGGGGGCT TGAACATTAG 000560 000561 CTGGGAACGG ACCCTGAAAG GGAGGCAGAA TCGTGCCCTT TTCCAGGCGG CCCAGGAGGG TGCCGGGCCC CGTCAGCGTC 000640 000641 TGGGGGTCTC AGGAGTGGGG TTGAGTGAGG CAGCCACCTG TCTATGCCGC AGAGACCCAG GGGTGGAGAT GTTTTCATCT 000720 000721 CGGTTTTCTG CCTGGTCTGT CCTCTTCTTC CACCAGGAGG CAGGGGACGG TTTTTGCACT TTCTTGCTAG GAACCCGAAG 000800 000801 CCGCAAAGCT GATGGCATCC TTCTTCCCTG TCCAGGAAAG CGAAGCGACT GGTTTGGGAA CAGAATGCTC TGATTTGGAG 000880 000881 CTCCTCCCAT CCCATTAAAG CCTGGATGCT GTCTGTGAGC AACGGTGCAA AATAATAAGT AGTTTCACAT TTAACCAATC 000960 000961 CTTGAAATAG GCCCTGACAG CTTTCTTAAT TTGTCTGTAA TATACCCCCA CGTCTACTAA AGACAAAGAC ACCTGTGCCT 001040 001041 TCCCTAAGGA ATTATATTGT GATTGGCCAC TTATATGATA AAGCATCCAG TTCTTTACGT TGGGGCCAGG TTTTATAAAT 001120 001121 GTTTTAGACT TTCACTAGGT TGGGTAAACA GTTTTCTACC AGAAAAGTGA GATTTGGGAC TTTCAGAAAG ATACTGACTA 001200 001201 ATGTATTGTC TTATTACAGG AATGTCGGAT TGCACATCCT ATTGTAAAAT GTACTTACTG CAGATCAGAA TTTCAACAAG 001280 001281 AGAGCAAAAC TAACACAATT TGTAAGAAGT GTGCTCAAAA TGTGAAGCAA TTTGGGACGC CCAAGCCTTG TCAGTACTGT 001360 001361 AACATAATTG CAGCATTTAT TGGTACCAAG TGTCAGCGTT GCACAAATTC AGAAAAAAAG TATGGACCAC CTCAGACCTG 001440 001441 TGAACAGTGC AAACAGCAAT GTGCTTTTGA TCGGAAGGAG GAAGGAAGAA GAAAGGTTGA TGGAAAGTTA TTATGCTGGC 001520 001521 TCTGTACTTT ATCGTACAAA AGAGTTTTAC AGAAGACGAA AGAACAAAGG AAGAGCCTGG GATCTTCACA TTCAAATTCA 001600 001601 TCTTCTTCAT CTCTTACTGA GAAAGACCAG CATCATCCAA AAcatcatca ccaccatcat caccatcacc atcGTCACAG 001680 001681 CAGTAGCCAT CACAAAATCA GCAATCTAAG TCCAGAAGAA GAGCAGGGAC TGTGGAAACA GAGCCATAAA TCCTCTGCAA 001760 001761 CAATTCAGAA TGAAACTCCA AAGAAAAAGC CCAAATTGGA ATCTAAGCCA TCTAATGGAG ATAGGTGTAT GTAATGTGTG 001840 001841 CCATTAGTAA GGTAATTTGC CAGTTGCATC CATTTCTGTC AGCTCTATAA ATCAGTCAGC AGATAGTGGG GGAACAGACA 001920 001921 ATTTTGTCCT TATAAGTCAA TTGAAAGAAG AAGTGATGTC ACTTAAGCGT CTCTTACAGC AGAGAGACCA GACCATTTTA 002000 002001 G |
Predicted Small Protein
Name | NONHSAT023785_smProtein_1421:1708 |
Length | 96 |
Molecular weight | 11085.9169 |
Aromaticity | 0.0631578947368 |
Instability index | 59.0074736842 |
Isoelectric point | 10.5198364258 |
Runs | 13 |
Runs residual | 0.00779113137174 |
Runs probability | 0.0571114100526 |
Amino acid sequence | MDHLRPVNSANSNVLLIGRRKEEERLMESYYAGSVLYRTKEFYRRRKNKGRAWDLHIQIH LLHLLLRKTSIIQNIITTIITITIVTAVAITKSAI |
Secondary structure | LLLLLLLLLLLLLEEEEELLHHHHHHHHHHHLLLEEELLHHHHHHHHLLLLHHHHHHHHH HHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooo |