NONHSAT024052
Revision as of 20:44, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT024052 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4990 nt |
Genomic location |
chr11+:109294858..109299838 |
Exon number |
1 |
Exons |
109294858..109299838 |
Genome context |
|
Sequence |
000001 AATTCGGCAC CACCGCCAGC CTCCAGTCCC CAAGGAGCAC ACGCAGCTTC CTCCTGTTTG GACACAGCTG GCGAGGGCCT 000080
000081 TTTGCAAACG GTGGTACTGT CCTGATCGTC TAGCCCCTCT CGTTCCCCGT CCTCGTTTCC AGCATCTTTG CCACCCTTGC 000160 000161 TTTTTTCCTT CTTCCTTCCT TTTCCATTTT CCTCTGGCCC CTCTTTCCTC TTCCTGGTTT CCTTACCTGC CCTCCCCTTA 000240 000241 CTCTTGTTTC TCCTCCGCCG AGGCACTGTG CGGTATTTGT AAATATTGGG CGAGGAAAGT CTCGGAAGAA GAAATAACGC 000320 000321 TGATAATAAT ACTTTATTAA TATTTATAGT AATTATTATA ATACTAATAA CACAATCCAA GCGCATGACA AATCACATAA 000400 000401 TTTCTAACTG TCAATGGAGG ATGCATCTTC CCATTCCACC CCGCGCTCCC CTCAATTAGG AGGAGAAACC GCACAAGCTA 000480 000481 CCAAATATAT AAAAGGCATT GATTCCCGGA GCAAAGGGAG GGGAGGGGGC CCGGTAATGT ACATAGCTGT CAAGTTAAGA 000560 000561 TTTAGTTTCC TTCCTTCCCC TCTGACCCCT AAGCTTTCAC TTTTCCTTTA GCTTCCCTTT CCTCCCCATT CCCACCCTCA 000640 000641 GCCGGGCTCA GGCAATAGTA TATTATAAAG AAAATGTCTA CATTAAGCAC CAGGACTGCA AGAGGCCATA GAGAATAGTC 000720 000721 CCCGGAAAGT GTTTATGACA GGTACCCCTC GCCAGTCCGC CCATTTCTCA CCCTTTGGTT AACCATTACA TTTTCCAGGA 000800 000801 CAGAGCATTT AATTTACTTT TTAAAATGAC CCTCGCTGGC CGAGCATAAG TACGTTAAAA TCTTTAAATG AGTTTTTTTT 000880 000881 AAAAAGCTAA CGCTTTCATT CCCTGCCCCG CCCCCACCCG TACACCTTTG ACTTGTGACA TTTTCAGGAT TTACAAAGGA 000960 000961 TCTGGGAGCT GTCCAGCCAG GTCTGGTGCT GAAGTCGCCT CACCGTTCTG ATTACTTCCT CTAGTTGTGA AGGCAGAGGA 001040 001041 GGGGCTGTTT TGGAAAGTGA CTATTCTGGC TTTTGGTTGG GTTCTTTCTT CTTTTTCTAC AATCGAGTTA GCGTGTACTA 001120 001121 TTGGTTTTCT TATTATTAAA CATTGCATAA GTTACCTTTT TTGTAAAAAA AAAAAAGTAT TAGGTGATGT GCAGTACTGA 001200 001201 AAGTGCAGTA TCTAACCAAC TAGAACGTTT GTTTTATTTT TAGAACAAGT GCACCTTTGT TATATATTTA GTATATTGGT 001280 001281 ACCAAATACA GAAAAAAACT ATAGTTCTGT ACTATGTCCT CCAAACTGTA TATTATTGTT CTTAATTTCC AGCTGTTGAT 001360 001361 ATAATGGTTA CCACTGGATG AGAAATTCAG TGGTGCAGAC CTGGCTTCTG CTGTTTCCAG AAGTGTTCTT TTGTACCTTA 001440 001441 TTCTGTAGTA GACTGTTATA AAAAGATGAC ACACACGCTT TATTTTTTCT TTTGCAAATA ATAGAAAAAA CACAACCACA 001520 001521 GAAACAAACA AATAATGGAT GTGCAAGAAT GCCATCTATT AAAAACATGG TTAATATTTA AACAGTGCCT GTAGTTCTCC 001600 001601 CTGCATGCAG TTACCACCTG GAGGCAGTGG TGTGTGTGCT TGCTTGTACT GTATGTGGTT GGGGATGAGA CTGGTGGGGA 001680 001681 TGTTGGGCAA TTTGGATGAT AGGACATGCG AATTTCAAGA AAAGCTAGAT CCAGTAATTA CTTATAGGAT ACAAATGTTT 001760 001761 GCAGCTTGTT TGTTTAGTTA CAAATCTGTG CCTGCAGCAA AAGAAAGGCT CTCTTTCTCA GTCTGTCCTA ACTTCACTGA 001840 001841 ACATACAAAA ATACTGAGAA AAAAAGAAAG TGAGAAAATA AGATAAATAT TTTATTATTT TCTAATGCCA GACAAGGCCA 001920 001921 TCTATGTTAG AAATGGAAGT AGTCTATAGT TATTTACCAC CTTGTTTCCT TTGGTTGAAT GACAGAAGAA GCCAGAAGCA 002000 002001 TATTACAATA TTAATTATAT GCAGTGACAT CTCTTCTTGG AAATCAAGCC TTTGACAGCT ATTCAAATTT TTGGAAAATG 002080 002081 TATGAATGAA AGTGATCTGC AAAAAGCTCT ACCAAGAGAG TCCTTACTAT CCTGCAGGGT GTAAGGCAAC AGTGCCCCTA 002160 002161 TGAGCATCCC TCTCCCAAGC AACTCATTGT TCTAAATTGT CTACTTGGTC CAGACATATG TGCTCTTATC CAGAGGAAAC 002240 002241 ATTACCTCTA ATATTTTTGG TCATCTATTA AATTGCCCAA GCTCAGTTTG CATCTTTTAT AAAAATAATT TAATAAACTT 002320 002321 AATTTTAATC ACCCATAAGA TAATCACCTT TCCTGAAGCA CAGAAGATCA TCATTGAAGC ATGCCATCTT GTAATATTAG 002400 002401 GAAGACCAGG TATAATCTTT GGGTACAATA TATTAAACAA TGAACCAGTT TTTCTCCAGT GCCTTAGTCA CTTCCTAGTA 002480 002481 ATAGGTAAAA GAGTGCATTA ACTCCCTCAG GCCACTAGGG AATCCTGTAG TGCATCAGAG TTCTACACTG TACATCAGAA 002560 002561 TGACTAAGGC ACTGTGAAGA AGAAAGTCCA TTGATTTTTG TAGCTTACCC TCATCCAGTG GTAGCTCTTT AATACCTTAT 002640 002641 TACAGAATGA CTTTTGGACT TGAAATTTGA ATAGAATCAG GGTCCCAGAA GGGAGCTTCA TCATTTCCAA TGAGCTCCAA 002720 002721 TAAGTGCATG GATATTACTT TCTTTCCCTT ATTTGGTGCA CTTTCTACAG CGAATAATTT CCCATTTTAT TAAAGCAATA 002800 002801 AGATGTTCTG TTGTGAGCAG TGCTGGATAA CGATTCCATT TTCTTGGTGC TGAAGCTACG CATATGTTCT TGCCTTATGA 002880 002881 ATCATAGTAT ATTCAAGGCA TGCAATAATA ATCCCCTTCC AAGGAGCAGC CTGTACACTC TGTGGGGGTA ATTATGAAAT 002960 002961 TGTCCTACAT CATTTCTCCC CAAAGGAATG CAAGGAGCAA GAGAAATAAA AGCATTATGT ATATTGTAAA ACAAATGATC 003040 003041 TCAATACCTC TCAACGTGGG CACACATCTG TAATACACTT TTATTGTGCA ACTTTAAATG TGTGTGCCTT TCTCCATTAA 003120 003121 TTGACTGTAG TTTAATATTT TTAATAGTGC TCTGTGTAAA GATGATGCAG TTTGTGAGTC AGATTTCATA CTGAGCTTAA 003200 003201 TATACTCAAA ACCTAAGCTT CCAGTGGTAT TACTTGTGAT TTTTTTATGA GATAGAGAAT TACATGAAAT TCTAGTAAGC 003280 003281 CAGTTTCCAC ACAAAATTAT TTCAATAAGC ACATATCCAA GCAATTTGTA CAGACCTTGT TTAAAGCACT GCTTCTTATA 003360 003361 GGGCTCAATT GGCAGTCTCA GGAGCTTGGG ATGCTACCAA CAGGGCATTT AGGTTTTCAT TTTTATGAAA CAAAAGGCAA 003440 003441 TCTGGAAATA GCTAAATTTA TTTTAAGGAT TTTATTCACT GATGTCCCGT CAAACTAAAT GCTTCAAACC CCTATAGCTA 003520 003521 CAGCTTAACT TCTGCACTTG CTATTCAGTA TTAATAAGGT GGCATGCTTG ATTCTTATTG TTTTTAAAAA TGAGAAAATT 003600 003601 TGGAGAGAGA ATACTATTAT GTCAACGGTA CAAGACTCTG AATCTTGAAG ATGTAGATGG ATATAATATT TAGACTTTAT 003680 003681 ATACACCCAT AGATATGTAT TTATATATGC ATACGTTTTG TATAAATTTA CAATTGACTT TTTGTATTCT CTTTTCTGTC 003760 003761 ATTACAAGAA TGAGATGGAA ACCAAAATAG TTGTTCCATC CTCTTACCCA AAGAGGATAC TGAAAAGTCC GGTATGTGCA 003840 003841 TGCACTTGTT TCTCTGGGGT CAAATCTGAA TGACTTTCTC TTTAATAATG AAAGGGGAGA GTCCTGGTTA GCTTGGAAAA 003920 003921 TTGGTAATTA GATAAGCTTC CTTTCCTAGG TTAGTGACTC AAATGTAGCA ATGATAATAA AGTTATGACC ATATCAATGT 004000 004001 GGTCTAAATA TCTAGATGGA AAGCAAAAAT ATCCAGAAGA GGTTTAGGGC CATCTAGACC ACAAACCTGG AACCTGGATT 004080 004081 GTGGTTTGAT TTTTTTCATT TTCAACCTAT ATGTTGTGTA GAAATACAAT TTATATCTGC ATAGCTAAAG GTAAAGTGAA 004160 004161 AATATGACCA TTATCTGTTT AGTTTGAGAA ATCATTTTTG GATAATATGG ATAAATTAGC TTTAAGAAAC TTCTTTGACA 004240 004241 TCTGACTTTT CCACCATTTC TATCTGTATC AATTGTATTA ATTAGATAAT GGTTAAATTT TTATTTTTTT ATCATGTAGA 004320 004321 CATATGCTTT CATGCTTTTC TGTGGGTGAA AGTTGAACAA TTGCTAGCTG ATATTATGTG GAAGTTACAG GTTAAAGTAG 004400 004401 AACCAGAAAT TTTAATATAA TCTGATCAGG TTCCTTAGTC CCATTCCCAT GTGAATCTGA ACTTTGAATT TGAATCTGAA 004480 004481 AGGCCTACTT ATTTGGGCCA TTTTTTGTTG GAACTTGTGA TTGTAACTCA CAGATGTTTC AGTTCATATT AGAATAAATT 004560 004561 GCCCAATCTA TAAGAGAGTG TTTAATCATT GGAATGAATG TAAATCTGAT TCTGATTTGG TTATTTATTT GATAACATTT 004640 004641 GAGAAACAGC TAATGTGGCT TGACATCAAT ACTTATTAAT GTCTTCAACC TAATAATACA ATTGGTGTCA TGTATGAATG 004720 004721 CTTAGCTGAC AATAAGAATT TAATCAACTT TATTTGGAGA CAATGACTTA TCAAGGAGGT CCTACCCATT TGTGGTAGGG 004800 004801 ATATTTCCCT TACAGTTGTG ATTACAAGGG ATTGTTTCTA TAGAGAGATG AACAGCAACA ACAGTGACAA TGATGACAAC 004880 004881 AGAAAAACTG ACTTTTGAAC TTGAGTATAT CCAATAGATA GAAGAAAAAA GATATTAGAA TTCATGGAAA TTTTGTTTTG 004960 004961 CTTTTCTATC AATAAAAGAG TTTTCTTGTT |
Predicted Small Protein
Name | NONHSAT024052_smProtein_1604:1885 |
Length | 94 |
Molecular weight | 10598.4639 |
Aromaticity | 0.0967741935484 |
Instability index | 42.4419354839 |
Isoelectric point | 8.82122802734 |
Runs | 16 |
Runs residual | 0.0411190760653 |
Runs probability | 0.0480149266915 |
Amino acid sequence | MQLPPGGSGVCACLYCMWLGMRLVGMLGNLDDRTCEFQEKLDPVITYRIQMFAACLFSYK SVPAAKERLSFSVCPNFTEHTKILRKKESEKIR |
Secondary structure | LLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHLLLEEEEHHHHHHHHHHHHL LLHHHHHLLLEEELLLLLHHHHHHLHHHHHLLL |
PRMN | - |
PiMo | - |