NONHSAT024410
Revision as of 20:46, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT024410 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1565 nt |
Genomic location |
chr11+:117281828..117283546 |
Exon number |
2 |
Exons |
117281828..117282633,117282788..117283546 |
Genome context |
|
Sequence |
000001 GGGGAAGGGC TGGGCTTACC CTGCCAACCC CCTGAGGAAG CTGCCCTCTG GCCCCTGTGG GGAGGAGTCA GCCCCTGGTG 000080
000081 GGACCCTGCC CCCGCCCCTC CCTCTAGCCC CTCCAGCCCC GGAGTCTGGC CTTTGTCTTT GCCCTTGAGC TCTTGTTTGC 000160 000161 TTCCTGTGGC TCCCTTATTC CCCCAGTCCT GCTGAGCAAC ATCTGGAGTG AGAGGGACAC CCTGTGGAGG AGACAGACGG 000240 000241 GCAATTATTT AAACCTGTTA TTAATTTTCC ATTCATCTCA TTCCTTGCCA AATGTTTTCC CCTCTCCCTC CCTTAGGCAG 000320 000321 CTAACAGTGA GTACCCCCCA CTAACCCTTT GGCCAACTTG AGAGCTGATG CTGGCCAAGG ATTGAGTTGA CAGAGGGGAG 000400 000401 CGCTTTGCTG ATGAGATTGG CGGGAGCAGG CGGATGTGGG AGCCCAGAGC CTTGTATCAG TAGCACCCAG CAAGGGGGCA 000480 000481 GAGGGCCTCC ACCACTTTCC CGTTTGGGAA CTGTTCTGGA GGGGCAGATG TTTTGAAGCT TTGAATTGCT AGGGACCTCG 000560 000561 GAGAAGCTGC TCTGGTAGCT GAGAGAAAGA GGGAGGAGGT GACAGATGTG ATGGCCTCTG TGCATCCTCT GTCACTTCCG 000640 000641 CGCCTCCTCT CTCCCCTCGC CATGCTCTCC TCTTCCTTCC CAGTGAGCAG CTCCGGCTCC TACAGCACTC CCATTCGCAA 000720 000721 GTCCCTGAGG CGGGCAGCAC CACCTTTCAG GGCATAATTG AGGCCAACCG GAGGTGGCTG GAACGTGTCA AGAATGACCC 000800 000801 CAGGTTACCT CTCTTCTCGT CAACACCCAA GCCAAAAGCT ACTTTGAGCC TCCTGCAGCT GGGCCTTGAT GAGCACAACA 000880 000881 GAGTGAAGGT GTATCGCTTC TGAGGCCCTG AGCAGGGGCT TGGGGCAGCC CAGCCTCTCC TCCACCCAGA CCAAGTGCCT 000960 000961 GAGGAGCTGC CTGCCTTCTT CCATCTGAGA AAGCACCCTC CTTCCCCCTT TGACTTGCAG GAGCCACCAG GGACCAGGGG 001040 001041 GTTGAGTGGA ACAGTAAAGC CACACATTCT GTGACTATAT AACCTATCTC AGGCTAAAAT GTGTGGACTC GTACGAGCTC 001120 001121 TTGTCATTGA CATGGCAAGC TGATGGCGTG CGGTGGCTGC GGGGTATCAG GGCCGGGAGC CCTTTGGGAG GAAGGGAGGC 001200 001201 GTTAGAGGAG CTGCCTTCGG AGGCTCAGGG AGTCCCTTTG GAGCTGGTTG TTTCCTTGGC CCTGCAGCGC ACTGCTCGGG 001280 001281 GCTCCCAAGG AGGTTGTGTG TATGGTTCTT AATTCATCAG GACAAAGACC CCCAGCATGT GTGTACCCTG GGACCCGATT 001360 001361 TCTCTGGGCC CACATCTATC TCCAATACCT CAGCCTCAGA TCAGACCCTT TCTTTTTTGT CTTTCTTCTC TTAATTTTTA 001440 001441 AATGCCTCTT TTCTTGAGCA TTCCATCTCT CTTTTTGACC CTCTCAGGAC TGGGCTTAGC TGTCCAGAGC CCTGCCGGAG 001520 001521 GGTGCTGGGG GCTGTCCCTC TGCAGGCACT GTGTTTTCCT CAGGG |
Predicted Small Protein
Name | NONHSAT024410_smProtein_1301:1456 |
Length | 52 |
Molecular weight | 6004.0965 |
Aromaticity | 0.21568627451 |
Instability index | 61.8823529412 |
Isoelectric point | 9.30084228516 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.0426098367275 |
Amino acid sequence | MVLNSSGQRPPACVYPGTRFLWAHIYLQYLSLRSDPFFFVFLLLIFKCLFS |
Secondary structure | LEELLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiii |