NONHSAT024567
Revision as of 20:46, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT024567 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1602 nt |
Genomic location |
chr11+:118928171..118929772 |
Exon number |
1 |
Exons |
118928171..118929772 |
Genome context |
|
Sequence |
000001 GGCGCTGGAT GCTTTGCTGC CGGGGTTCGG GAGTGACCTG CGCCTAGAGC AGGTCGGGCG CACTGCAGTC CCGCACTCGG 000080
000081 GGCTCTTCTT CCGGTCACCT GTAGAGCCCG GCCGAGGAAT GGAATAACAG GCGTCCTGTC CGCAGCCCCG CGGAGGGGGC 000160 000161 GCTGGCCTGC CGGTTAGTAT TGAGGTGCCC TAGGCTTTGG ATAGACGTTG GAGAATGGCT GTCCCTCGGA CTGAGTCCGT 000240 000241 CGcaaccccc tctgttttac tgaggaaact gaagccacag aaaAAGATGT TTGCTGATGG GTCAGAGATA ACCGATGCAT 000320 000321 TCGTCGCAGA ATCTGGCCAG GATTTCTTAG GTTAAGCCCC ACTCATTTGT ATAAGAAAGA ATATTCCAAA CTTAAGTACT 000400 000401 ACACACAAAA GACACTTTTA TTTGTGAGGC TATAGTTGGT TGAGCTTGTG TGCACCTTCT CCTATTTCTG TTCTATTAAA 000480 000481 TCTTGTGAAC ATTTCTCTAC TCTTTAGCTG TTTCTGTCAT AGAATGACAG AAGCACCTCA CTGCCTTCTC TTTTAACTTA 000560 000561 CAGCTCCATA GAAATGTGCG CAGTCGCccg ggcgcggtgg ctcacgcctg taatcccagc attttgggag gccaaggcgg 000640 000641 gcgaatcact ggaggtcagg agttcgagac cagcctggcc aacatggtga aaccccgtct ctaccaaaac tacaaaaatt 000720 000721 agccaggcgt ggtggcgggt gcctgtaatc ccagctactc acgaggctga ggcaggagaa ttgcttgaat ccgggaggca 000800 000801 gaggttgctg tgagcccaga ctgcgccact gcactccagc ctgggcgaca acagcgagac tccttctcga aaaagaaaTG 000880 000881 TACGCAGTCC TTGGAGACTG CATTTTCCTT AAGTGTGGAT GGAAATAAGT CATCTGTTTT CTCTCCTACT AAGTTGATGC 000960 000961 CTGGCCACCC TTCACAGAAA GGCCCGCTTG AAGACCCTGG CTGTCAGGGC CAGGGTTGTG TCAAGCCTGA ACTTGTTTAA 001040 001041 GGAGCTCTTA GCTCTTCCTT TCTCTACATT TTTCGTGATG CTTAGGTGGA GAGTGGTCCG GTGTCTATGC TTAGAAGGAA 001120 001121 AAATTATTGG CAGTCCCAGA GAGAGTCTAT TCTTCCTTtt tttttttttt ttttttttat tgatcattct tgggtgtttc 001200 001201 tggcagaggg ggatttggca gggtcatagg acaatagtgg agggaaggtc agcagataaa caagtgaaca aaggtctctg 001280 001281 gctttcctag gcagaggacc ctgcggcctt ccgcagtgtt tgtgtccctg ggtacttgag attagggagt ggtgatgact 001360 001361 cctaacgagc atgctgcctt caagcatctg tttaacaaag cacatcttgc accgccctta atccatttaa ccctgagtgg 001440 001441 acacagcaca tgtttcagag agcacagggt tgggggtaag gtcatagatc aacagcatcc caaggcagaa gaatttttct 001520 001521 tagtacagaa caaaatgaag tctcccatgt ctacttcttt ccacacagac acagcaacaa tccgatctct atcttttccc 001600 001601 ca |
Predicted Small Protein
Name | NONHSAT024567_smProtein_1106:1228 |
Length | 41 |
Molecular weight | 4934.5866 |
Aromaticity | 0.275 |
Instability index | 59.23 |
Isoelectric point | 6.51898193359 |
Runs | 8 |
Runs residual | 0.0219758064516 |
Runs probability | 0.0700075075076 |
Amino acid sequence | MLRRKNYWQSQRESILPFFFFFFFIDHSWVFLAEGDLAGS |
Secondary structure | LLLLLLLHHHHHHHHLHHHHEEEEELLLLEEEEEELLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooo |