NONHSAT024715
Revision as of 20:47, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT024715 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1227 nt |
Genomic location |
chr11-:119983118..119988749 |
Exon number |
3 |
Exons |
119983118..119983184,119986046..119986122,119987667..119988749 |
Genome context |
|
Sequence |
000001 CTGGGCCACA TCAGCGTTTC CCAGGGCTTG TTTCACCGCT CTCTAGTCTC TAACTACACG CTGCAACAAC AGCTCTCAGT 000080
000081 GGTCAGGACC GGGGGACATG CCATACCCCC TGCACTCGAC CTCTCTGATC CTCAGGATGC TGCTTCTCCT ACTGCAGAGT 000160 000161 TTATTTAACT CCCAGCGTTG GCTGGCTCTA GGGTCCTGTG GCCATGGGGC ACCTGCCAGC ATCCTGCAGA TCCAATCCTG 000240 000241 CAGGCGCCCC TTTGGGAAAG GCAGGACCAG ACGACCCTAA GTCCCCCCAA GGCTGATCCT CTTTTCCTGC ACTCTGTCCC 000320 000321 CCGCCTGCCT GTGGTGCTCC CAGCACTCTG ACAAGGCAGA GTGATTGACG CCTCCTGTCC CCTGGGGTTG GGGGCATCCT 000400 000401 GAGGGGGCAG GCTTGAACCA GACTCTGGCT ATGGGCCCCA GACCCTCATG TATCTCCTGA AAGATCCCAG GGACAGCTCT 000480 000481 AATGGCTGTG GTGGGAGTAA CCCTGTCTCT CTTCTGGCAC CCCAAACATC TGGCCTGGAA GTCAAGATCA GCACATTGGG 000560 000561 TGGGCTCAGG AGAGGGAAAG GGGCTATGCA GGGCAGAGAG ACCCCTGAAC AGTGGTCTCT GAGGCCTCAT CACTCAGTTG 000640 000641 TCCCTTCCGG CCCAGGGTCC TATACTATAC CCAGGACAGG GATTCTTGGA GCTGCCGGCA AGAGGGAGGA GACAGGACTA 000720 000721 TGGGTGGAGG GTCCCAGCCT GCAGGAGCCC CGGGCATGTC TTAGCTCTGA TCCGGGCCTG GGGAGCTCCA GGACTTGCCT 000800 000801 TGGCCTGTTT GGCTTCTAGC AGGCGCCTTT CTGCTCTCTG CTCAAGCCTG GCCCACAGAG CACCTGGCAG GGGAGGTGGC 000880 000881 CGCTCTCAGG TGTGATTCAG AGCAGCCCCC AGAATGAGGT GTGGGTCCTT TTGGCCCCTC TGGGACCAGC GCTGTGCCAC 000960 000961 TAATGCCTCT CTCTCTCCCA GCAGGCACTG GGAAAACCCC TTATCAGTTC ACCACCTTGG GACAGGCCAC TGCAGAGTTT 001040 001041 TCCAAACCAC TGGGTCGCAG TGGGCTGTCT AAAAATAATC CCGGCTATCC CTCCCTCATG CGGAGCCAAA GCCCCAAGGC 001120 001121 CCAGCCCCAG ACTTGGAAAT CTGGCAAGCA GACTATGCTG TCTCACTACC GGCCATTCTA CGTCAACAAA GGCAACGGGA 001200 001201 TTGGGTCCAA CGAAGCCCCA TGAGCTC |
Predicted Small Protein
Name | NONHSAT024715_smProtein_962:1222 |
Length | 87 |
Molecular weight | 9272.3927 |
Aromaticity | 0.093023255814 |
Instability index | 55.0989534884 |
Isoelectric point | 10.2345581055 |
Runs | 11 |
Runs residual | 0.0117146824019 |
Runs probability | 0.0416486004721 |
Amino acid sequence | MPLSLPAGTGKTPYQFTTLGQATAEFSKPLGRSGLSKNNPGYPSLMRSQSPKAQPQTWKS GKQTMLSHYRPFYVNKGNGIGSNEAP |
Secondary structure | LLLLLLLLLLLLLLEEELLHHHHHHHLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLL LLEEEEEELEEEEEELLLLLLLLLLL |
PRMN | - |
PiMo | - |