NONHSAT024761
Revision as of 20:47, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT024761 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1135 nt |
Genomic location |
chr11-:121899037..121971159 |
Exon number |
5 |
Exons |
121899037..121899553,121904022..121904170,121934888..121934979,121936844..121937142,121971082..121971159 |
Genome context |
|
Sequence |
000001 ACTGAGAGCT CTCATTTTCC CCCCTTGCTC GGGATGGTGC CACAGGAGGC TGTGCGGGCC CCGCTCCGCT TCGAATGGAT 000080
000081 ACAGTTAAGC TAATGATCTC GAGAGGATAT CGTCCTGGAT AAGGGTGGAG CCTACGCCCA AAAACAAGAT TACCTGAAAG 000160 000161 AGAAAAGAAA GGGGGAAAAC ACACAGAGAT ACAGTCGGGG AGGCCACATG AAGATGGAGG CAGAGACAGG AGTGATGAGC 000240 000241 CTGCAAGCCA AGGAATGCCA AGGGCTGCCA GCAGCCATGA GAAGCTGAGA GACACAGAGA ACGAGTCCTC TGCCAGAGCC 000320 000321 TCCAGAAGGA ACTAACCCTG TCAATACCTT GATTTCGGAC TTCTGGACTC CAGAACTATA ACCCTCCTTC CTCCACCTCA 000400 000401 CAAAAACTCA CAAGCTGCAA CCCTTCTGAT GTCCACTCCC ACACAAACCA GCTTCAGGCC TTTTTCAAGT GGATGCTGTG 000480 000481 GGGCACCACC TCCTTGAGGA CCAAGGCACT CCAGCTGCCA GGAATTTGGC TGCTAACCTC ACACAGCTGA GCCTTCCATG 000560 000561 AAAATTGCTC TCTGCCAAAG AGAACTTCCT AGTCCAAGGT CATGTCTACT CTCCAGAGAT GTGACTGGAG TGATTTGCAC 000640 000641 CCGGATGCCT AGACTCGCCA TCTGCTCAAA GACTGCTCAG AAAGCCCTCC CATGCATTCC CCTGCTGCAT ACCAGCCCAC 000720 000721 TCTGCCTGCA GCTGCTGTCT GCAGGACTTC ATATCTATGC CACACTGTGT AAAAGCTGTG CTTCAAGAAA TCACAAAAAC 000800 000801 ATTTTCCTGC ACCTACTACA CAGCCTGAGT GCGGCATAAG TTGACCTTGC TTGCTAAGAA ATGGGGCAAG AAATGCTTTT 000880 000881 TTGTGTGTGT CATGTCTGTT TGTTTTTCAA TTAAGAGAGG AAAGCATTAG GCAGATGGAA TGTACATGTG AGGATGAGGA 000960 000961 GACAGAAAAC AAGTAGCCCT TTCCATCAAG ATAGAGGGTT TTCTGGGGTT GCTGGCTATT GAATGTCACT CCTGATTTCT 001040 001041 CTTTCCAAGG CACTGTACCA CCAGCCTACT GAGATTGTGT GGGAGCTTTC ATGGGGGTTG TATTTCACTG ATGAAAATAA 001120 001121 ATTTTTTGCA TAATG |
Predicted Small Protein
Name | NONHSAT024761_smProtein_557:838 |
Length | 94 |
Molecular weight | 10163.1957 |
Aromaticity | 0.0215053763441 |
Instability index | 66.076344086 |
Isoelectric point | 9.57904052734 |
Runs | 16 |
Runs residual | 0.0411190760653 |
Runs probability | 0.0348823087793 |
Amino acid sequence | MKIALCQRELPSPRSCLLSRDVTGVICTRMPRLAICSKTAQKALPCIPLLHTSPLCLQLL SAGLHIYATLCKSCASRNHKNIFLHLLHSLSAA |
Secondary structure | LLEEHHHLLLLLLLLEELLLLLLEEEELLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHH HHLLHHHHHHHHHHHHHLHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH HHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTT TTTTTTToooooooooooooooooooooooooo |