NONHSAT026024

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT026024

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2926 nt

Genomic location

chr12-:6258866..6290040

Exon number

5

Exons

6258866..6259251,6277314..6279096,6281363..6281718,6285974..6286098,6289765..6290040

Genome context

Sequence
000001 GCTGCTGTGC CTCCTTGGCC CTCATCGCCA TCTGACAGTG TGCACTCGAC TGTTGTGGCC TTTCGTCTGC CTCCTTCACT 000080
000081 TGAATGGGAG CCTCCTGGGG CAGGGGCTGC TCCTTTTGCT GCTGTTGCAT CTCCAGGCCT GCAGCCAGGC CTGCCCCGCA 000160
000161 GTGGGTGTCA ACACGCTCTG TGGAACGAGG GACGGAATGA GGGACGTGAG TGATCTGTGT GGATGGAGGA GTGACTTGCA 000240
000241 ATGGAAGCCT GCCAGCCAAG ACAGCTGGGC CCCTGGACAA AGTCTTGCTC AATTCCTCAG GTTGCAGTAG AATGGCATGA 000320
000321 ACAGGACTCA CTGCAGCCTC GACATCCTGG GCTCAAGTGA TCCTCCTGCC TCAGCTTCCT GTGTAGCTGG TACCACAGGT 000400
000401 GCTGCTGGGT GACTTTGAGC AAATCCCTTC CTCCCTCTGG AACTTCAGGA ATCACTTCCT TGTCATTCAC ACAGGGTCAA 000480
000481 TCTTCACCTT ATAAGTACCC GCGGGTTCTA TATACCGTCA TTTGAAGAGT AGAACATGCC TTGCAAGTGT GTTTGCTGCA 000560
000561 TCACACGGGT AGAGGCCAAG CTGCAGGCTG CCTTGCAGGC CTGCTTAGAC GCTCCTGTGG GTAACCAGGG GCGGTGATTC 000640
000641 AGGGCGTACC AAGTACCTGC GTCAACGTGA TTCGCTTTGA TTTTCCCAGG CCGTGAGATA CTTCAGACAG ACACAATTTC 000720
000721 TCCCAGCGAC AGGGGAGGAA GCCGAGGCCT TGAGAAGAAT CATTTTTTGA GCACCAAAAG AAGAAACTGG TGGCGGGGCG 000800
000801 CAGTGGCTCA CACCTGTAAT CCCAGCACTT TGGGAGGCCG AGGCGGGCGG ATCACCTGAG ATCAGGCATT CGAGACCAAC 000880
000881 CTGGCCAACA TGGTGAAACC CCATCTCTAC TAAAAATACA AAAATTAGCC GGGCATGGTG GTGCATGCCT GAAATCCCAG 000960
000961 CTACTCAGGA GGTTGAGGAG GGAGAATTGC TTGAACCTGG GGGGCGGAGG TTGCAGTCAG CCGAGATTGC ACCACTGCCC 001040
001041 TCCAGCCTGG GTGACAGTGA GACTCCATCT CAAAAAAAAA AAAAAAAAAA AAAAGAAGAA GAAGAAGAAG AAACTGGCAA 001120
001121 CTCTGGCAAC TCTCCTAAGA GGGAGGAAGA GAGGAGAAAG GACAGGGCAG GGCGGTGACA AGTGTCCTGG AACGGAAAAA 001200
001201 GAAAAAAGAA GAAAAAAATT GCACCTGTGT AGGAGGAGAT GCTGGTGGCC CTTGGAGTGC CCATGTGAGA GAAGAGCCAG 001280
001281 TTCCAGGATT CCAGTGAGAG CAGCCAGCTC AGCGTGGCTC AGCAGCGGGG GACAGCCGTC TAGGAATCCC TGCGGAGCAC 001360
001361 CCCAGAGAAG GAGCTTCACC TCGGGACCTG GGTCTCATTT TCAGGGACTT CATCTCCCTG AAAAGCAATG CTGCATCAGA 001440
001441 CACAGAGACG CCCCGACAGA ACGGAAAACA ATATGCACTG TTCAACATGA AACTCCCATT CATCTCACTG CTGCATGACT 001520
001521 TTGCCTAAGA GTTCAGGATA AAGTAATGTT TGCAAATACA TCCTGAAATT GCTTTTGTGG GTTAGCATCA TTAGATTGCA 001600
001601 TTATGCTTTG GGATTAAAAG CGTTAACTTT GCCATGTAGC TATTTCAAAT AGATCACAAG CTCTTTTTTT TTTTTTTTTG 001680
001681 ATGATCACCA CTATACTAAC GAGGATCAAA TAGACCACAA GTTCTGCAAC CCTGTTTAGA TGTTTCTTCA TTTCATAAAG 001760
001761 TATAGGTACC AAGAATCTCA GTACCTCCTC CTCTCCCCCC AGACTTTCTC TTGTTATTCT GGGATCAAAG GGGCCTCATG 001840
001841 TCCCCTCTGA GGGACCTTAC CCCTATCAAG CAGGCTGGCA AGCGGGAGAA CGGAGGCCTG AGAAGCTGCA ACACAGCTAC 001920
001921 ACTGAACTCC CCAGCCAAGC CATGTGCTTG CATCTGCCCG TCTACTCCAG AGTGTGAGCC AAACATCTGA GACTGTGAGA 002000
002001 ATTCGGAGAG CTGACCCCAG ACGTTGGTTC CAGTGTTGGG AGGAACCTGG GAAAATCAAG GGATGCTTTG GTCCTGTCAT 002080
002081 TGTGACTGAC AAGCAATTAG AGGTGAATAT CTGTGAATAT TTGGGGGTTT AGAATGTACC TGTTGAAATG AAATGCCCCT 002160
002161 GGGATATGAA ATAACTTTAG CTGTTGGCAT CTAAGACAAC AGAGGCAGCT GGACGTGGTG ACTCACGCCT GTAATCCCAG 002240
002241 CACTTTGGGA GGCCGAGGCG GGTGGATCAC CTGAGATCAC GAGTTTGAGA CCAGCCTGAC CAACATGGTG AAACCCCATC 002320
002321 TCTACTAAAT ACAAAAAATT AGCCGGGCGT AGTGGCGCAT GCCTGTAATT CCAGCTACTT GGGAGGCTGA GGCAGGAGAA 002400
002401 TTGCTTGAAT CCGGGAGGCG GAGGTTACAG TGAGCCAAGA TTGCACCATT GCACTCCAGC CTGGGCAACA AGAGTGAAAC 002480
002481 TCCATCTCCC CCCCCACCCC GCAAAAAAAG ACAACAGAGG CGTTCAATCA GTCGGCCGCG CAGGGAATCC AGGCCTCCTG 002560
002561 CCAGCTACAG CACCAGCTGG GCAGCACCGT GCATGAGCCG TCTTGGAAGT GGATCTTCCA GTCCCAGTCG TGCTGGCGCC 002640
002641 TTTGGCTGAC TGGGCCTTAG CCAACCTCTG CGGGATCCTG AAGCCGAACC ACTGAGGAAG CCAACCAATT GCAGAGGAAT 002720
002721 ATTCTTCAGC TTCTACAAAG AATCCGGCCT CTTATTTTTC TTGAAACTTA CAGCTGTCTT GGTGTGTCTT ATTTTTTTCC 002800
002801 CCTCTTGATA GAGAAGTGCT ACAAAGAAAT GTTTTTGTAC TTCAATAAAA AGACGAAGTA AGTAAAAAGA TAAATGACAA 002880
002881 CTGGTTTGGA CCTCATGTTG GAGATGTGAT AGGGTGTAGA AGGGAC
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Predicted Small Protein

Name NONHSAT026024_smProtein_944:1177
Length 78
Molecular weight 8601.3316
Aromaticity 0.0
Instability index 113.962337662
Isoelectric point 5.14752197266
Runs 13
Runs residual 0.0327498588368
Runs probability 0.0424496895086
Amino acid sequence MPEIPATQEVEEGELLEPGGRRLQSAEIAPLPSSLGDSETPSQKKKKKKKEEEEEETGNS
GNSPKREEERRKDRAGR
Secondary structure LLLLLLLLEELLLEELLLLLLLLLLLEELLLLLLLLLLLLLLHHHHLLLLHHHHHLLLLL
LLLLLLHHHHHHHHLLL
PRMN -
PiMo -