NONHSAT026024
Revision as of 20:51, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026024 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2926 nt |
Genomic location |
chr12-:6258866..6290040 |
Exon number |
5 |
Exons |
6258866..6259251,6277314..6279096,6281363..6281718,6285974..6286098,6289765..6290040 |
Genome context |
|
Sequence |
000001 GCTGCTGTGC CTCCTTGGCC CTCATCGCCA TCTGACAGTG TGCACTCGAC TGTTGTGGCC TTTCGTCTGC CTCCTTCACT 000080
000081 TGAATGGGAG CCTCCTGGGG CAGGGGCTGC TCCTTTTGCT GCTGTTGCAT CTCCAGGCCT GCAGCCAGGC CTGCCCCGCA 000160 000161 GTGGGTGTCA ACACGCTCTG TGGAACGAGG GACGGAATGA GGGACGTGAG TGATCTGTGT GGATGGAGGA GTGACTTGCA 000240 000241 ATGGAAGCCT GCCAGCCAAG ACAGCTGGGC CCCTGGACAA AGTCTTGCTC AATTCCTCAG GTTGCAGTAG AATGGCATGA 000320 000321 ACAGGACTCA CTGCAGCCTC GACATCCTGG GCTCAAGTGA TCCTCCTGCC TCAGCTTCCT GTGTAGCTGG TACCACAGGT 000400 000401 GCTGCTGGGT GACTTTGAGC AAATCCCTTC CTCCCTCTGG AACTTCAGGA ATCACTTCCT TGTCATTCAC ACAGGGTCAA 000480 000481 TCTTCACCTT ATAAGTACCC GCGGGTTCTA TATACCGTCA TTTGAAGAGT AGAACATGCC TTGCAAGTGT GTTTGCTGCA 000560 000561 TCACACGGGT AGAGGCCAAG CTGCAGGCTG CCTTGCAGGC CTGCTTAGAC GCTCCTGTGG GTAACCAGGG GCGGTGATTC 000640 000641 AGGGCGTACC AAGTACCTGC GTCAACGTGA TTCGCTTTGA TTTTCCCAGG CCGTGAGATA CTTCAGACAG ACACAATTTC 000720 000721 TCCCAGCGAC AGGGGAGGAA GCCGAGGCCT TGAGAAGAAT CATTTTTTGA GCACCAAAAG AAGAAACTGG TGGCGGGGCG 000800 000801 CAGTGGCTCA CACCTGTAAT CCCAGCACTT TGGGAGGCCG AGGCGGGCGG ATCACCTGAG ATCAGGCATT CGAGACCAAC 000880 000881 CTGGCCAACA TGGTGAAACC CCATCTCTAC TAAAAATACA AAAATTAGCC GGGCATGGTG GTGCATGCCT GAAATCCCAG 000960 000961 CTACTCAGGA GGTTGAGGAG GGAGAATTGC TTGAACCTGG GGGGCGGAGG TTGCAGTCAG CCGAGATTGC ACCACTGCCC 001040 001041 TCCAGCCTGG GTGACAGTGA GACTCCATCT CAAAAAAAAA AAAAAAAAAA AAAAGAAGAA GAAGAAGAAG AAACTGGCAA 001120 001121 CTCTGGCAAC TCTCCTAAGA GGGAGGAAGA GAGGAGAAAG GACAGGGCAG GGCGGTGACA AGTGTCCTGG AACGGAAAAA 001200 001201 GAAAAAAGAA GAAAAAAATT GCACCTGTGT AGGAGGAGAT GCTGGTGGCC CTTGGAGTGC CCATGTGAGA GAAGAGCCAG 001280 001281 TTCCAGGATT CCAGTGAGAG CAGCCAGCTC AGCGTGGCTC AGCAGCGGGG GACAGCCGTC TAGGAATCCC TGCGGAGCAC 001360 001361 CCCAGAGAAG GAGCTTCACC TCGGGACCTG GGTCTCATTT TCAGGGACTT CATCTCCCTG AAAAGCAATG CTGCATCAGA 001440 001441 CACAGAGACG CCCCGACAGA ACGGAAAACA ATATGCACTG TTCAACATGA AACTCCCATT CATCTCACTG CTGCATGACT 001520 001521 TTGCCTAAGA GTTCAGGATA AAGTAATGTT TGCAAATACA TCCTGAAATT GCTTTTGTGG GTTAGCATCA TTAGATTGCA 001600 001601 TTATGCTTTG GGATTAAAAG CGTTAACTTT GCCATGTAGC TATTTCAAAT AGATCACAAG CTCTTTTTTT TTTTTTTTTG 001680 001681 ATGATCACCA CTATACTAAC GAGGATCAAA TAGACCACAA GTTCTGCAAC CCTGTTTAGA TGTTTCTTCA TTTCATAAAG 001760 001761 TATAGGTACC AAGAATCTCA GTACCTCCTC CTCTCCCCCC AGACTTTCTC TTGTTATTCT GGGATCAAAG GGGCCTCATG 001840 001841 TCCCCTCTGA GGGACCTTAC CCCTATCAAG CAGGCTGGCA AGCGGGAGAA CGGAGGCCTG AGAAGCTGCA ACACAGCTAC 001920 001921 ACTGAACTCC CCAGCCAAGC CATGTGCTTG CATCTGCCCG TCTACTCCAG AGTGTGAGCC AAACATCTGA GACTGTGAGA 002000 002001 ATTCGGAGAG CTGACCCCAG ACGTTGGTTC CAGTGTTGGG AGGAACCTGG GAAAATCAAG GGATGCTTTG GTCCTGTCAT 002080 002081 TGTGACTGAC AAGCAATTAG AGGTGAATAT CTGTGAATAT TTGGGGGTTT AGAATGTACC TGTTGAAATG AAATGCCCCT 002160 002161 GGGATATGAA ATAACTTTAG CTGTTGGCAT CTAAGACAAC AGAGGCAGCT GGACGTGGTG ACTCACGCCT GTAATCCCAG 002240 002241 CACTTTGGGA GGCCGAGGCG GGTGGATCAC CTGAGATCAC GAGTTTGAGA CCAGCCTGAC CAACATGGTG AAACCCCATC 002320 002321 TCTACTAAAT ACAAAAAATT AGCCGGGCGT AGTGGCGCAT GCCTGTAATT CCAGCTACTT GGGAGGCTGA GGCAGGAGAA 002400 002401 TTGCTTGAAT CCGGGAGGCG GAGGTTACAG TGAGCCAAGA TTGCACCATT GCACTCCAGC CTGGGCAACA AGAGTGAAAC 002480 002481 TCCATCTCCC CCCCCACCCC GCAAAAAAAG ACAACAGAGG CGTTCAATCA GTCGGCCGCG CAGGGAATCC AGGCCTCCTG 002560 002561 CCAGCTACAG CACCAGCTGG GCAGCACCGT GCATGAGCCG TCTTGGAAGT GGATCTTCCA GTCCCAGTCG TGCTGGCGCC 002640 002641 TTTGGCTGAC TGGGCCTTAG CCAACCTCTG CGGGATCCTG AAGCCGAACC ACTGAGGAAG CCAACCAATT GCAGAGGAAT 002720 002721 ATTCTTCAGC TTCTACAAAG AATCCGGCCT CTTATTTTTC TTGAAACTTA CAGCTGTCTT GGTGTGTCTT ATTTTTTTCC 002800 002801 CCTCTTGATA GAGAAGTGCT ACAAAGAAAT GTTTTTGTAC TTCAATAAAA AGACGAAGTA AGTAAAAAGA TAAATGACAA 002880 002881 CTGGTTTGGA CCTCATGTTG GAGATGTGAT AGGGTGTAGA AGGGAC |
Predicted Small Protein
Name | NONHSAT026024_smProtein_944:1177 |
Length | 78 |
Molecular weight | 8601.3316 |
Aromaticity | 0.0 |
Instability index | 113.962337662 |
Isoelectric point | 5.14752197266 |
Runs | 13 |
Runs residual | 0.0327498588368 |
Runs probability | 0.0424496895086 |
Amino acid sequence | MPEIPATQEVEEGELLEPGGRRLQSAEIAPLPSSLGDSETPSQKKKKKKKEEEEEETGNS GNSPKREEERRKDRAGR |
Secondary structure | LLLLLLLLEELLLEELLLLLLLLLLLEELLLLLLLLLLLLLLHHHHLLLLHHHHHLLLLL LLLLLLHHHHHHHHLLL |
PRMN | - |
PiMo | - |