NONHSAT026067
Revision as of 20:51, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026067 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1481 nt |
Genomic location |
chr12-:6548167..6560681 |
Exon number |
4 |
Exons |
6548167..6548842,6557806..6557923,6559507..6560146,6560635..6560681 |
Genome context |
|
Sequence |
000001 AGGAAAGGGC CCTGACAAGA GGATGGGACT GCAGTTGTGG CTGCCAGGGC CCCGGCCAGG GTGAAAACAA GGAACATTCC 000080
000081 AGAGAAGATC ACAAGGATGC GAATAAAATC GGAGCTGCAC AGGGATCTTT GGGCTGTAAT AGGAGGGGAC ACACAGGGGT 000160 000161 TAGGGGAGGG TCTAGCCCTT GGCTCCCTCA GCCCAGCCCT CCTGTCACCT TGCCTCTCCC CTTTCCCCCA CCTTATTCTA 000240 000241 TCCCACCCGC CACCGTTGGC CAACTCCTCT CCTAAACAGT GGACTCTGCT TTTTCCCCTC CTCTTATCCC TAATCCTAGG 000320 000321 AGCTTTCTGT CTGGCTTCCC TCCTGGCCCC TCGTGTATGC ATTCTCTCTA GCGGTGGGGA TTAAGGAGAA AACTCACGTG 000400 000401 GCCAGTGGGT AGAGAGAGTC CGGGCAGGCA GCTGCCTGAA GTCAGCCAGA GTCTGCATGT GCCCAGCTGT CCTGGCCTCC 000480 000481 AGCATCTCTG GAAAAACAGA GACAGAATGA GTAGCAGCAG GGGACCCCAT AGGGCACATC TGAAGGCCTG AGAGGTGCTG 000560 000561 GATGGGATGG GAAGGCAGAA ACAGGCTGAC CTTATCTAGG GGTAGGAGTG GGGAGTACTG GTTGGGGTAT CACCGCTACC 000640 000641 CCACGTGATG GCACAGAGAG TTGCCTGGAA CTTACCACTG ACATAAGagt cttgctttgt cgcccaggtt ggagtgcagt 000720 000721 ggcacgatct cggctcagtg caacctccgc ctcctgagtt caagtgattc tcctgcctca gcctccctag tagctgggat 000800 000801 tacaggtaga cccagtgtaa tcacaagcat ccttgtaagt ggcaaagagg cagaggagac agcgccagag aggcagctgc 000880 000881 atgagaagga tcaagatgtt gctgactttg aagttggaag aagaaggcca tgagcctcag tatgtgggcg gcttctagaa 000960 000961 gctggaaggg gcaaggagat ggatttgacc cttcagcctc caggggcagc tgtacctgcc atcactgatt gtagcctggt 001040 001041 gaggcctgtt ttagacttct gacctgtaga gctgtaacat aatacatttg ggttgttttc aaccactaag tttgtggtaa 001120 001121 tttgttgtag cagctgtaga aaatgaatac atatgaatcc tctggcattt gtttgagatt tgctctatgg cctagtatgt 001200 001201 ggttgtaaat gttccatctg tgcctgaaaa aatgtatatt TCTAATTCAG TAGTCTCTGC TTTTTTTTTT TATTTTGTAC 001280 001281 CCCATCAATA AAATGATTTT CAGCATGTAT CCCCAAATAA ACAATATTTT ATTTATTGAT TGATTGATAA ACAGACATGT 001360 001361 TTAATGATAG CTTGCTTTTC ACAGAGGTGA CTTCGGAGAC TTCTAATCTA TAATCCAGGA GTATATAACC ATGCAGCACA 001440 001441 GACCAATTAG TCACATGTAA AATAAACTAG ATTCTTACCA C |
Predicted Small Protein
Name | NONHSAT026067_smProtein_929:1027 |
Length | 33 |
Molecular weight | 3441.7697 |
Aromaticity | 0.09375 |
Instability index | 79.621875 |
Isoelectric point | 7.86859130859 |
Runs | 5 |
Runs residual | 0.0353954081633 |
Runs probability | 0.0231937820173 |
Amino acid sequence | MSLSMWAASRSWKGQGDGFDPSASRGSCTCHH |
Secondary structure | LLLLHHHHHHHHLLLLLLLLLLLLLLLEELLL |
PRMN | - |
PiMo | - |