NONHSAT026207
Revision as of 20:52, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026207 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1499 nt |
Genomic location |
chr12+:7084358..7086173 |
Exon number |
2 |
Exons |
7084358..7084540,7084858..7086173 |
Genome context |
|
Sequence |
000001 CTGGGGCTGA CTTTTCTCTC TTTTTTACTT TAGGTAATTA AGAATCCAGT ATCAGATCAC TTTCCAGTTG GATGTATGAA 000080
000081 AGTTGGCACT TCTTTTTCCA TCCCGGTTGT CAGTGATGTG CGTGAGCTGG TGCCCAGCAG TGATCCTATT GTTTTTGTGG 000160 000161 TAGGGGCCTT TGCCCATGGC AAGGTCAGTG TGGAGTATAC AGAGAAGATG GTGTCCATCA GTAACTACCC CCTTTCTGCT 000240 000241 GCCCTCACCT GTGCAAAACT TACCACAGCC TTTGAGGAAG TATGGGGGGT CATTTGACAG TAGTAGAACC TGTTCTGAAA 000320 000321 CCAGAAACTG TTGATGTCAC ATCCTTTGAC CCTGGTCTGA GCTGACTGCT GGAAGATGAT CTTTCTGCAC TGAGACTGTG 000400 000401 GAGTTTGGGG AAGCCAAGGC TGTACATTTG CTATTTGTTT ATCCTATGAA TACTGTTCTT GCAAACCTGG TTGTTTTGGG 000480 000481 GTTCCTAAAG TATCCAGTGG TGTAAAACTG TTTGTTCCCC GGGACTTCAG GGACAGATAG GAGGTTACAG AGTTTGCAGT 000560 000561 TTGGTTCCAT GCTTTGAAGG CAGGCTTTAG CTCCCAGATT CCCATGTGCT AAAGGAGAGA ACCCTGATGA TGGAGAAGAA 000640 000641 CTGTGAAAGA GAGCAGTCAG GAATGCTAGT GGTGAAAAAC TGAACAAACA GAAGTGATTT TATCTAATAC AGTTCCAAGG 000720 000721 TAGAAAAAGT GGAGCAGGCA GGGCCTTGCA CCCCTCTCCA CCCCCCCATG GGGGGGGTGG TGGTAGCGGC ACATACACAA 000800 000801 TCATAGTAAA TTGGCAGAAG AAAAACACAA TAGATTCCTG GCTAGATGGG GAGAGATAAG GCAATGTGCA TGGGGGAATC 000880 000881 AGAGGGGAGA TGTGAGCCCC TCTGCTCCTC CCACAAGAGT TTCCCCTTTG ggccgggcac ggtggctcac gcctgtaatc 000960 000961 ccagcacttt gggaggcgga ggcgggtgga tcacttgcgg tcaggagttc gagaccagcc tggccaacgt ggtgaaatcc 001040 001041 cgtttctact gaaaatacaa aaattagctg ggcatggtgg cgtgcctgta ttcccagcta cttgggaggc tgaggcagga 001120 001121 aaatcacttg aacccaggag gtggaggttg cggtgagctg agatcccgcc actgcattcc agcgtgggtg acaaagcaag 001200 001201 acgccttctc caaaaaaaaG TTTCCCCTTT GGCCCCAAAT GAAGACTTGG CTGGCAGCAG AGGCACAGCT GGAAGCATCG 001280 001281 ATCTTCCACC TCCCTGGCTT TTCCATTCTC TGCTCTGGGG CAAAGGAGTG CTGTGAAAAG GGAGACGAGT AGTTTCTGCA 001360 001361 CCAGTCCCGC ACAGGCCACC TGCAAGACAA GAGGAGTTTG GAAGGCTGGT TAGTTACTCC TGTAATTCCT GGTCTATAGC 001440 001441 CCTTCCAGAT GTTTCCTAGC ATGCCTCAAT AAGTCACAGT AGTCATTGCC CATACTGTG |
Predicted Small Protein
Name | NONHSAT026207_smProtein_1073:1351 |
Length | 93 |
Molecular weight | 10220.7545 |
Aromaticity | 0.0869565217391 |
Instability index | 57.2663043478 |
Isoelectric point | 8.26080322266 |
Runs | 12 |
Runs residual | 0.00477009696591 |
Runs probability | 0.0444930224342 |
Amino acid sequence | MVACLYSQLLGRLRQENHLNPGGGGCGELRSRHCIPAWVTKQDAFSKKKFPLWPQMKTWL AAEAQLEASIFHLPGFSILCSGAKECCEKGDE |
Secondary structure | LHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLEEEEHHHHHLLLLLLLHHHHHHH HHHHHHHHHHHHLLLLLEEELLHHHHHHLLLL |
PRMN | - |
PiMo | - |