NONHSAT026257
Revision as of 20:53, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026257 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1950 nt |
Genomic location |
chr12+:7649137..7651951 |
Exon number |
2 |
Exons |
7649137..7650666,7651532..7651951 |
Genome context |
|
Sequence |
000001 TCTCTCTGAG CTCCAGGTAG ATTCTGAGTT TGAAGTGTGC TCCATAAAAG CAGTCTGAGT AATTATTACA GAGAATGCCG 000080
000081 TCAGACAACC TTCCAAACTA GTTGAATAAA GAATGTGTCA AAGATTACAG GTATAAAGGA ATTCCCAGCA AGGAATTTAC 000160 000161 TAGGCATTTC TACTTCTTAA GGAGCACGTT CCTACTCTTA AGGAGCACAG GACtttccgt ttctgctttt ctttttgttt 000240 000241 agtgttttgg ttttggtttG GTTTTAACTT ACCAGAACAT GTCACGCCAG CATCTTCATT GTGATTGCAA TAATGCTTTC 000320 000321 CCCATTCATG GTGTTTACAT TGCCAGATAG CAGGTTCATG TCCCTGGCAA GAAACGCTGT CAAGCCAGAT GTGTCCAAAT 000400 000401 CCCTTACTGG CGTTAACTCG ACCAATGGCT GTGACGGCAG TTGGACATCC CAGTTGCTTG CATGCCACAG CAGCATCGTA 000480 000481 ACTGTCCCAG CCGTCATCAC ATATTGTCCC CCATTCTCCT TGGAATCTCA CTTCTAATCT TCCTGAACAT TCAGTGACTC 000560 000561 CATCTACCAG TCTCAGGCTC AGATCTGCTC CCTCTGTAAC AGAGACACAC AACAGGTCTG CGATAAGGAA GCAAGAACAT 000640 000641 GAGACTATAA ATAGCTATAC CTGAGATGAG TTAAGGAAAA GGGGAGAGAT ATAAGTGGAG ACAGAGAAAA CTGTGATGTA 000720 000721 CTGTACTACC ACTGGAAATC ATTCAAGATG GAAGGAGGAG TGGATCAGGC AAGAAGATGG GACATCTCAG TATAGACAGC 000800 000801 ATATACTACA GGAAGTGTTT CTAACAGGAG ATACAGGGAC TGAATTTCAT CTAGAGACCT GCTATTTGAC CACCACAGAG 000880 000881 TTCTTGTTAG AACTGTTTAC TTTTTCTGGT TAAAATATAT TTGCATGTGT TTAGGTGACT CCCTCATCCT TCAGTTTGCC 000960 000961 TCCATACTTA GCAATCCCTT TTGCCTCTGA CTGCATTCTC CATTGATACT ACCTAGCCTG TGTTGTACAC CTGAACCTGT 001040 001041 TGTGACCACT TCCTTAGTTT AAAAGCAGAG CAAAGAGAAA GGAGGCTTCA GTACTACAAT TTTCACCTTC CCCAAATCAA 001120 001121 TATTCTTCAA AGAACAGACG TTGATTCTGA AGAATATTCT GTAATAAATT AAACTGGTTG TTTCCTCTGG CAGTTTCCGT 001200 001201 TTTCATTCCC ACAATGTTAT TCATTGTGGG ATTGTGATTC GTCAGCATGT GCTAACTGGG GGCCTAGAGA AATGTTGATG 001280 001281 GGTAAAAGAG AATGGAAGGT ACAGTCTGTG TTTTTTCTAC TCCAAATTCT TCACATTCTT AACCTAACAA AATCTATCTT 001360 001361 TCTTGTAGGA GTTCCATTCA TTGTGGTTCA GGCTATAGCT GATCACATTG TTCAACAAGA AAAAGCTTGT Tcaagacatg 001440 001441 cagaaagaga tagaacccag atgacattgt tcaagaacct gaatccaacc atgcatgagg ctaactatac cctctggatt 001520 001521 tcccagtttt TTCCAGAGAG CTGACTCATT TCCGTTGCAT ATAAGATCAT CAAACCAGAT TGGTCCAGAG CCTTCTCCAA 001600 001601 AATTAGATGA ACCAGAGAAA CTGACAGCAC TTCCACATTC AAGTTGTCTA CAAATGACAG ATGCATGATC TATGTTGAAG 001680 001681 TTATCATCAC ACACTGTTCC CCACCGTCCT TGGAATTTGA TCTCTATTCT TCCAGAACAC ATATTCCCTC CACGCGTCAG 001760 001761 CCTCATTTCC AAATTGGATC CATCTGGAGC AGAGAAAAGA CCAGAGTTCA GAAGTTACAT TCATTTAGAA GTGATTTTAG 001840 001841 AAAAGAAGTT TCCTCTGGAC ACTTGGGATT TTATGTTGTC CTTAAAATGG TGCCTGATTT TGGACATTGC CCAGCTCCAC 001920 001921 ACGGTAGAGA ATTTTAATAT GTTAAAATCT |
Predicted Small Protein
Name | NONHSAT026257_smProtein_1664:1936 |
Length | 91 |
Molecular weight | 10470.8805 |
Aromaticity | 0.122222222222 |
Instability index | 53.9467777778 |
Isoelectric point | 9.13775634766 |
Runs | 15 |
Runs residual | 0.0268077601411 |
Runs probability | 0.0391214744156 |
Amino acid sequence | MIYVEVIITHCSPPSLEFDLYSSRTHIPSTRQPHFQIGSIWSREKTRVQKLHSFRSDFRK EVSSGHLGFYVVLKMVPDFGHCPAPHGREF |
Secondary structure | LEEEEEEEEELLLLLLEEEELLLLLLLLLLLLLLEEEEEEEELLLLEEHHHHEELLLLLE EEELLLEEEEEEEEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |