NONHSAT027140

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT027140

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2152 nt

Genomic location

chr12+:16535761..16591695

Exon number

2

Exons

16535761..16536538,16590322..16591695

Genome context

Sequence
000001 acaactaact cagcaatggt gggcgcccct cccccagcct cgctgctgcc ttgcagtttg atctcggact gctgtgctag 000080
000081 caatgagcga gactccgtgg gcatgggacc ctccgagcca ggtgcgagat ataatctcct ggtgtgcctt gttttaagcc 000160
000161 cattggaaaa gcacagtatt agagtgggag agacctgatt ttccaggtgc cgtctctcac ccctttcttt gactaggaaa 000240
000241 gggaattccc tgaccccttg cacttcctgg gtgaggcgat gcctcgcctt gctttggctc gtgcacggtg cactgcaccc 000320
000321 actgacctgc gcctactgtc tggcactccc cagcgagatg aacctggtac ctcagttgga aatgcagaaa tcacccgttt 000400
000401 tctgcctcac tcacgctggg agctgtagac cggagctgtt cctattcggc catcttggct tctctcTGAG CTAATACTTT 000480
000481 TAAAATATTT TGCACTCCAC AGAGGAAGGT TTTATATGTA AGTCTGAGTT TTGTTTTTCT GAGTTGTTTT CAGTTGGTCC 000560
000561 ATGTGATTAC ATTTTTATAC ATGGtaaaaa tttatatatt tttttCCAAG tctttttctt tttcttttct tttctttttt 000640
000641 ctttttattt ttgagacgga gttttgttct tgttgtccag gatggagtgc aatggcatga tctcagctca ccgcaacctc 000720
000721 tgcctcccgg attcaagtga ttctcctgcc tcagcctctt gagtagctgg gattacagGT CTAGTggcac ttgaatcttt 000800
000801 agcacaacag ggagcctctg tgcccagggt tcagtggctt ccaggaattc ttcccagaat aaacctcaac attctgcagt 000880
000881 cttcatgggt gctggcgcaa gttgcttttc aagttcttca tactctactg acctcagact tcttctcagc ccgaggaaaa 000960
000961 cagcttcctc ttcctcctgg ccattcacca agacacacca ttctcttctc tccttgtcca gggcgcttag catggtcact 001040
001041 tcCAAAGTTT GTGCATTTTC AAAAGAAAAT GAAGACATCC TTCCATGCTG TTGCAAACAT GCCCTGAGGC AAGAAATCAC 001120
001121 AAAGGCTCTT TGGAAAACAG GAATAAGTGA CTGCAGGTAT GACAGAAAGT GAAACAGAAT AAATGAAAAT TAACGCCCCA 001200
001201 CAGATGTATT TATCCACAAA TTTTATCATA AGGTGACTTG TTGGTAGTCA CATAAAAAGT AGAAAAAAAC CCCTCTGAAT 001280
001281 CAAGTATTTT AAAGTATTCC TGGGTATCTT TCCTCTAAGT CTCAGATTAT CCACACAGGG TCCACATAGT TTTAAGAATA 001360
001361 GTTGGCATGC CTAGGCTTAA CTCTGTGGGA CAGTAAATTT TTTTAAAAAA AAGCTTTTGC CTGCTCTTGG AAGACAATAT 001440
001441 TGTGTTCAAT ATAGTGCAGT GCTCCACAGC TTGTAAAATC AACTATGTGG CACAAATCTG AAGACGTCTT CAAAAGATAT 001520
001521 ATGGCAAGAA AGATATGTTG CCGGCTTTAG TCATCTTTGC CATTTCTCTT ATGGAATTTC ACTATAGTGG CTGGACATGT 001600
001601 GCAACCCACA TCCTGTCTGG CCTTAATGTG ATTTTTCTAC AAAAGGAGAG GAGGACAAAA GTAAAAGCAA AATATGCTTT 001680
001681 ACAATGAAAA ATGCAACCCT CAGCCACTGG GATAAAATTA CATTGACAGT GGGGGAGTTA TTTTCTTCCT TCAAAGAACG 001760
001761 ATGTTTGATG TTCCAACTAG ACTCTATGGT GATGAAGCTC ATAATTTGGG AGCTGAATCA GATTCGAATT TAGAAAAGGG 001840
001841 GTTTCAGACG TTGCTTAGCA GGGTGATTTT AGGGGTTAAC ATATGAATAG AGATTACATT ATAACTCATC TGCCCTGTGT 001920
001921 TTGTTGGACA CAGCTTATAT GACCTATTCC TGATGGTTGC TCATAGAAGG ATATTTAAAT TCTGTTGTAA TTCTTCCTTA 002000
002001 TAAAATCTGT GACATTCTAA TAGATAGAAA ATGTTTAAAT CTTGTCTAGT TTCTGCTTCG TTTCCTTCTT TATGTTGATT 002080
002081 TCTTCCTATT TATCTCTTTT GTGCATCACA CATATTTCAC TATAAACTCG ATTTTTGTGG GTGAAAGGCC AC
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Predicted Small Protein

Name NONHSAT027140_smProtein_884:1171
Length 96
Molecular weight 10521.0181
Aromaticity 0.0736842105263
Instability index 46.8378947368
Isoelectric point 9.35247802734
Runs 10
Runs residual 0.0237878159967
Runs probability 0.045627980922
Amino acid sequence MGAGASCFSSSSYSTDLRLLLSPRKTASSSSWPFTKTHHSLLSLSRALSMVTSKVCAFSK
ENEDILPCCCKHALRQEITKALWKTGISDCRYDRK
Secondary structure LLLLEEELLLLLLLLLHHHHLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHEEELLL
LLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL
PRMN -
PiMo -