NONHSAT027601
Revision as of 20:57, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027601 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2092 nt |
Genomic location |
chr12+:32155165..32157256 |
Exon number |
1 |
Exons |
32155165..32157256 |
Genome context |
|
Sequence |
000001 atggcgtgaa cctgggaggc ggaggtggca gtgagccgag atcgtgccac tgcactccag cgtgggcgac acagcaagac 000080
000081 tccatctcaa aaaaaaaaaa aaaaaaaaaa tcaagtagct tgctcggggt tccataacac ctcttccttc tgtttctctg 000160 000161 gctttccctc agtccacata taaggcttca tgagagaaga cacgaatgga tataaaccaa tgggaataaa ccaagacaag 000240 000241 tcctggttta tgaattggtc tgcacagtat gctggctcca gctggaagta ttacatagcc tcacttagag atgaccctaa 000320 000321 gagacagtga taaagCCAAC CTCATATCTT GCTACCAGAA GCACATGAGA ATAATTCTTT TAAGAGGCTT TAAaatccca 000400 000401 gctactcagg agggtgaagt gggaggatcc cttgagcatc ggagcttgag accagcctgg acaacatagt aggacactgc 000480 000481 ctcaataaaa aaTTAAGTAA ATAAATAGAT AGCTTTTGAG TTATCTATAC TGTGATATAA TACACCACAC CCTTTACAAG 000560 000561 AGCAAATTCT GGGGCATGAT TAAATGAAAA GCAAAGGTAG TACTTCATAG CATCTGCAAA CTGGCATAGT GCAGACAGGC 000640 000641 AAAAAGCAAT GGTAAATAAC TACTGGAACA TATGTAGAAA ATGTCCTGTT TGGCATCTAC Tgcagagtag gctctcaatc 000720 000721 agatgggtaa gatagctagt cctatggatg tcagcctttt tccccagcca ccctggtgct taataggccc atttataaag 000800 000801 tgccatggca acaagaaagg aggtctgcat ggacttctca ctgaggcttc tctgcccatg caccaagagt caaggctatg 000880 000881 ctgggcccct gactgatcac accattctcc agggaaccaa tgagcctctt ggtggtagat tgatacattg gaccctttct 000960 000961 acacagaagg agaagcaatt tgtgcctttg ggaatagaaa cattccaaat atgaatttgc ctgccAGAAA TGGTCCTGCT 001040 001041 GGCACTAAGc agaaggccta ttcattgctg tgatattcca tacaaatcac taagcaacct gtctacagtg aaggacacga 001120 001121 tgagagagaa ttacactgat acaatttact agcactacca caagccccaa ggacccagaa gcatctgact tgacaaaatg 001200 001201 gcagaatgcc tgctaacagc ttagttacta cattagctgg agaaaattag ctggaggatt agaaggctgt cttacagaat 001280 001281 gaatatatga cttaagccag tagctaatat ttggtgacgt ctcccgcata gccaaatacc gcatgaaccg aataaccaag 001360 001361 gggtggaggt ttggaatggc ccctttcact ttttcccttt ttattttaat ttatttattt gaggagttgc tgtgttaccc 001440 001441 aggctggagt gcagtggtgt gagcacagct cactgcaacc tcaacctccc aggctcaagt aatcctccca cctcagcctc 001520 001521 ccaagtagct gggactacaa acatgcgcca ccacccccag cttatttttg tggttttagt agagaagggg tctcactatg 001600 001601 ttgcccaggc tggtctccta ctcctgggtt caagcaatca acctgccttg gcctcccaaa gtgcttggat tacaggtgtg 001680 001681 tgccactgca cccagccAAC ATTTTCCCTT TTTAAAGAAA Agaaacataa ttcagacata catataaagc atacaattca 001760 001761 gtgatatttt ttagtatatt tataaagttg tacaaccatc aacactatct aatttcagca gattttcatc atctccaaaa 001840 001841 gaaactccat atccattagc agttcacttt ccattcacac caccctaccc ctagcacctg acaaccacta agctactttc 001920 001921 tgtctctatc aatttacata ttctgtgcat tttatattaa taaaatcatg taatatgtga ccttttgcat ctggctcttt 002000 002001 tcatttagca taatgttttc aaggcttatc tgtgttgtag tatgtatcaa tatttcattc cttttggcca ggcatggcag 002080 002081 ctaacgcctg ta |
Predicted Small Protein
Name | NONHSAT027601_smProtein_722:895 |
Length | 58 |
Molecular weight | 6242.324 |
Aromaticity | 0.0701754385965 |
Instability index | 66.1263157895 |
Isoelectric point | 7.77569580078 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0337788769162 |
Amino acid sequence | MGKIASPMDVSLFPQPPWCLIGPFIKCHGNKKGGLHGLLTEASLPMHQESRLCWAPD |
Secondary structure | LLLLLLLLLLLLLLLLLLEEELLLEELLLLLLLLLLHHHHHLLLLLLLLLLLEELLL |
PRMN | - |
PiMo | - |