NONHSAT028136
Revision as of 21:00, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028136 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
952 nt |
Genomic location |
chr12+:50152587..50155920 |
Exon number |
2 |
Exons |
50152587..50153104,50155487..50155920 |
Genome context |
|
Sequence |
000001 CACttctttc tttccttttt tttttttttt tgcacttctt tctGTACTAC TTTGGGCAGT GCTCTCTAAG CCTTCCCATT 000080
000081 ATCCTTCATA GGATGGAGCC TTCTGCCACA AGTGAAAACA GGCTGCACAA GGTTGGGCAT TGCTAAGAGA AAATGGTTTG 000160 000161 CTCAGACACC ATTTGTGTAA GGCCAGTCTG GCAGTGGCTG ATTGTTAAAA TGATTGAAAC TCTTCCAGTG ACCAGTGCAG 000240 000241 TATTGTGCCT AGGGAAGTAA AGTGGTCTTC ACCCTAGGCT GCAGTTCTCG TGAATGGTAA TGTTCATAGG GTTCACATTT 000320 000321 GATGTACTTT CAAGTGACTA TGAGCCAGAA AGTATGGCTG GTTTTTTTTT CTCTGCAACT TCTGCTGTAT AGTAACTTCA 000400 000401 TCTCTTACAT TTGTTAGGCA AACCTGTATG TGGGACTGGT GGTCATGTGT GGCTTCGTCC TTTTTGATAC TCAACTCATT 000480 000481 ATTGAAAAGG CCGAACATGG AGATCAAGAT TATATCTGGC ACTGCATTGA TCTCTTCTTA GATTTCATTA CTGTCTTCAG 000560 000561 AAAACTCATG ATGATCCTGG CCATGAATGA AAAGGTTAGT TAGCCTACAA CCCAAAGATG AGACAATAAT GGCTCCTGAG 000640 000641 CTTGGCATGT GTGTATACTT CAGATTTGAA AACTTGCTCA CACACTGTGT TAGGTCCAGG GTAACTGTAA GGCAGGCCAC 000720 000721 TGAGTAAGAG GTAAGCCAGA AGTCTTCAGT TGTTAGAAAA AAAGCAGCAA GTGAAAAAAA AATTTTTTTA ACTAATTCCT 000800 000801 GCGTTTAGTA TGAAAGGGAA AAAAGCTTCA GTGGCAGTAA ACACAACCTG CTACATGAAT AATTTAAAGG CTATATAGTT 000880 000881 GTGACTCAGA GAAAGGTATT GTGGAGGACG TTGTAAATTT CAGAAGTAGA CTAATTTTAT CCATTTGTTA AT |
Predicted Small Protein
Name | NONHSAT028136_smProtein_152:259 |
Length | 36 |
Molecular weight | 3933.8318 |
Aromaticity | 0.0571428571429 |
Instability index | 48.0742857143 |
Isoelectric point | 7.72113037109 |
Runs | 7 |
Runs residual | 0.0188861985472 |
Runs probability | 0.027847174906 |
Amino acid sequence | MVCSDTICVRPVWQWLIVKMIETLPVTSAVLCLGK |
Secondary structure | LLLLLLEEEELHHHHHHHHHHHHLLLLEEEEEELL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTiiiiii |