NONHSAT028820
Revision as of 21:03, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028820 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
588 nt |
Genomic location |
chr12-:56743285..56748291 |
Exon number |
6 |
Exons |
56743285..56743293,56743373..56743420,56743881..56744216,56744613..56744672,56744882..56744974,56748250..56748291 |
Genome context |
|
Sequence |
000001 CAGAGCTCCC ATTGACCACG GGTTGGAACA GCTGGAGACA TGAGCCTTTG TGGTAGAAAC CCAGCCCTGC ATGCCCCAAA 000080
000081 CTCCCCATCG ACCCCTCATC CTCAAGACTG GCAGCAAGTT CACCGTCCGA ACAAGGCTGC TGGTGAGACT CCAGGAAGGC 000160 000161 AATGAGTCAC TGACTGTGGA AGTCTCCATT GACAGGAATC CTCCTCAATT ACAAGGGTAG GTGCTTGACA AGGACACTGC 000240 000241 AAACATCtgt acagtgtatg acctgcagaa ccacattcgg cagccctgGT GGCACAAACA AGGAAGAGGG GGATTTGGGA 000320 000321 TATGGACAAA GGGAGATGGC GAGATCTGAA ATGAAGTGGA ACTTCTGTTT TTTTTTTTCT GCTGAGTTTT TAGAATAATT 000400 000401 CCATTCCTTG TCTCCATGTA TCTTCCTCCT GGAACAGCTT CCGGAAGTTC AACATTCTGA CTTCAAACCA GAAAACTTTG 000480 000481 ACCCCCGAGA AGGGGCAGAG TCAGGGTTTG ATTTGGGACT TTGGTTACCT GACTCTGGTG GAGCAACGTT CAGGTGGTTC 000560 000561 AGGAAAGGGC AGCAATAAGG GGCCACTA |
Predicted Small Protein
Name | NONHSAT028820_smProtein_257:397 |
Length | 47 |
Molecular weight | 5294.864 |
Aromaticity | 0.173913043478 |
Instability index | 43.3413043478 |
Isoelectric point | 4.92950439453 |
Runs | 7 |
Runs residual | 0.00918737060041 |
Runs probability | 0.0293360587479 |
Amino acid sequence | MTCRTTFGSPGGTNKEEGDLGYGQREMARSEMKWNFCFFFSAEFLE |
Secondary structure | LEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHLEEEEEEEEEEL |
PRMN | - |
PiMo | - |