NONHSAT028844

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT028844

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

768 nt

Genomic location

chr12-:57107653..57119085

Exon number

4

Exons

57107653..57108223,57108386..57108471,57118236..57118307,57119047..57119085

Genome context

Sequence
000001 GTCTTTCTGC CGCCATCTTG GTTCCGCGTT CCCTGCACAA AATGCCCGGC GAAGCCACAG AAACCGTCCC TGCTACAGAG 000080
000081 CAGGAGTTGC CGCAGCCCCA GGCTGAGACA GGGTCTGGAA CAGAATCTGA CAGTGATGAA TCAGTACCAG AGCTTGAAGA 000160
000161 ACAGGATTCC ACCCAGGCAA CCACACAACA AGCCCAGCTG GCGGCAGCAG CTGAAATTGA TGAAGAACCA GTCAGTAAAG 000240
000241 CAAAACAGAG TCGGAGTGAA AAGAAGGCAC GGAAGGTAAG ATTTGAAAAG GATTTCAGGA TCTTATGAAG CACCTTTATA 000320
000321 CAGAGTGGAA CTGtttattt ccataggttt ttggggaaca ggtggtattt tggttataca agtaagttct ctagtggtga 000400
000401 tttttgagat tttggtgcac ctgtcaccca agcagtatac actgaaccca atTCTTAGTA GTGGTAGAAT CCCGTTGAAA 000480
000481 GTAACAGAAG TAGCTAGGTT ggtggctcac acctgttatc ccagcacact ggaaggccaa ggcagatgga tcacttgagg 000560
000561 tcaggagttc aagaccagcc tggccaacat ggcgaaaccc catctctact aaaaatacca aaaatatata gcagggcatg 000640
000641 gtggtaacgc tcctgtaatc ccagctacta aggtggctga ggcacggcaa ttgcttgaac ctgggagacg gacattacat 000720
000721 tgagccgaga ttgcaccact gcactccagc ctgggcgaca gagcaaga
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Predicted Small Protein

Name NONHSAT028844_smProtein_41:307
Length 89
Molecular weight 9619.2665
Aromaticity 0.0227272727273
Instability index 85.3306818182
Isoelectric point 4.36444091797
Runs 11
Runs residual 0.00636363636364
Runs probability 0.016107016107
Amino acid sequence MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
EEPVSKAKQSRSEKKARKVRFEKDFRIL
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLHHHHHHHHHHHHHHHHL
LLLLLHHHLLHHHHHHHHHHHHHLLEEL
PRMN -
PiMo -