NONHSAT029126

From LncRNAWiki
Revision as of 21:04, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT029126

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1784 nt

Genomic location

chr12+:64392054..64393594

Exon number

1

Exons

64392054..64393594

Genome context

Sequence
000001 AACCAAAGAT AGTGGCATTT ACATAACAGA AGTTTCAAGG CATTTCAGCA AGACCCAGCA TTAGCAAGGC TATGTTTAAG 000080
000081 CAACACTATA ATGTACATCC TACTTCCTGA GAGAAAGAAA TCAGAGTGGG TCCTAGTAGT AACCTACCTT CACAGGTCAG 000160
000161 CTAGGAGGAC TGATGATGCT CATCACTGGA GCATCTTCTC TGTTCTATCA CAGATTGGTA GCCCTGGGAC CATGGCATTA 000240
000241 AAAAGCACCA CACTTTGCTC TAAGCACCCA TAGGCACCAT GAAATTCACC GGAAGGTTCA CATGGCACAG ATTCCCACCT 000320
000321 AACTCTCCCA ACTGAAAATT GCTCTCAGGA TTATTTATAT TCTTTTTCAT CATTCCTTGA GATATTTGGA AATCCAGTCT 000400
000401 ATAGAAAAAT TACTCAAGAA CTGTCACTCA AAATCAAGCT CAGCCTGCCA TTTGACTCTT AAGACAATAC CAGGCAAGCA 000480
000481 TGAACTTCCT TAGAGAGATA ATTATGCACA TACTTGCAGG AATAAGTATG AATAAACAGA GAAGAATACA TAGTTCCTCT 000560
000561 AAATACATGC TATAGTTTAT TCATTCCTTC TTCAATAAGT ACTTATTGAA GCTTTCTTTG TCTCAGGCAT TTGTCAAGAT 000640
000641 GTTGGGGATA CAGCAGTAAC CAATACAGGC CTTCTCCCTG CCCCTTGGAT CTTATAGTAG GAAAGTACAA TTACAATCTT 000720
000721 AATTACAGAA CAGCATGTTA ATTGTACAGT AAGGGGAGAA GCCCCTTACT TCTTATGACT TGGAGATGAG GAAAGCTGCA 000800
000801 ATTTGAATCA GTTATTAAGA GTTAGCTGGA AAATGGTGGT AAAGGAGCAG AAAACTCTTC CAGGAAGAAA CAGCATGTGT 000880
000881 GAAGAACCAC ATGCCGTGAG AGATTTCATG GAGGAAAAAG GTGTTCTTTG TAGGTGACTC AAAGAATGGG AGAGGGCAGA 000960
000961 TGGCAAGAGA GATGATTGGA GAAATAAGGA GTTGAAATTA AAGGCCATAT TGAGGAGTTC AAATTTATCC TAAGAGCAGT 001040
001041 GGAAAGCCAT TCACAGGTTT AAACACGATA GTGACGTGAT CCACTTTCAG TGTGCCTGGA GTGTGGAGAG TGGATTGAAA 001120
001121 GATAATAAGA CAGAAAGTCT CAGTTTGCAG CTCTTGGAAC TAATCCAGAT GAGAGATGAG GATGCTCTTC CTTGGTTGTG 001200
001201 GCAGTAGAAA CAGAGGAGCA GGTGGATTCG AGTGGTGTGT TGGAGATAGA ATATGTAGGC CTGGGTAATT GATTGGCTGG 001280
001281 GTGGGAGAGA AGAGAGATGT AGAGGGAGCA GTCAGAGGTG ACACCCAGGC TTGGGCAGTT GTCAGGGTGT TAGGCGTCAT 001360
001361 ATGAGAGGAG AAGGCTCAGG ACACAGAGGC TGTGATGGGA ACGGGATTAT GGAAAACACG GTGTTTACTT TTGGGTGTGC 001440
001441 CTATGGATAA CTGGGTAGAG AAGCCCCATA AGCAGACCAA GAACTTCAGG AGAGAGATCA AGACTAGAGA GTTGGGAATC 001520
001521 TTCCACCTTT GGCTCGTCAT TTCCTCTTAA AAAGGAGGAG CTGGGCTTCA GCCCTAAGAA CTTCATTGCC CTGGGGATCA 001600
001601 GACAGCCCCT ACCTACCCCT GCCCACTCCT CTGGAGACTG AGCCTTGCCC GTGCATATTT AGGTCATTTC CCACACTGTC 001680
001681 TTAGAGAACT TGTCACCAGA AACCACATGT ATTTGCATGT TTTTTGTTAA TTTAGCTAAA GCAATTGAAT GTAGATACTC 001760
001761 AGAAGAAATA AAAAATGATG TTTC
[back to top]

Predicted Small Protein

Name NONHSAT029126_smProtein_1394:1549
Length 52
Molecular weight 6065.149
Aromaticity 0.0980392156863
Instability index 40.8647058824
Isoelectric point 10.1774291992
Runs 8
Runs residual 0.00262085032033
Runs probability 0.0413906553613
Amino acid sequence MGTGLWKTRCLLLGVPMDNWVEKPHKQTKNFRREIKTRELGIFHLWLVISS
Secondary structure LLLLLLLLEEEELLLLLLLLLLLLLLLLHHHHHHEEEEELLLEEEEEEEEL
PRMN -
PiMo -