NONHSAT029217
Revision as of 21:05, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT029217 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
810 nt |
Genomic location |
chr12-:66439263..66444615 |
Exon number |
3 |
Exons |
66439263..66439806,66440784..66440992,66444559..66444615 |
Genome context |
|
Sequence |
000001 GGAGTTGTTC CTGACTTCTG GTCTTCATCC TGCCTCATGC TAGCAGTATG ACTTTAGGTC TGAAGCAAAG TATCTGTGCC 000080
000081 TGACTCTTAC AGGATTGTGA AAAGTAAAGA GGTTAACATA TGGCCAATGC TTTAAACTCT GTGGTGAAGA TGCCAGAGAG 000160 000161 TAATATTCTA CAGATGGGAA AACTGAGTCC CCGAGAAGCA AACAGGCTTG ACTTAAATCA TGTGACAAGT GAGTATCAGG 000240 000241 AAAAACATTC AATACTCTGG ATTATACACT CTGCCACCCA GACTGGAGCG CAGTGGCATG ATCTTGGGTT ACTGCAACCT 000320 000321 CCACCTCCTG GATTCAAGTG ATTCTCCTGC CTCAGCCTCC CGAGTAGCTG GGATTATAGG TGTGAGCCAC CACACCCGGC 000400 000401 CTATATGCAT TATCTCATTT AACCAACATA ATAATTCTAT GAGGCTTATA AGCTATATTT TTTAAGATGA GAAAATGGGC 000480 000481 TTAGATAACT TGAAAGATAG CGTAGTCACT AGGAGCTTGT GCTCTGTGGC CAGACTTTGT GTGTTTGAAT CCCAGGTCCT 000560 000561 CCAGTTCTGA GCTGTATGAC ATTGCGCAAG TGACTTAATT GCTGTCTCAT GTATAAAGTG GTGTGAAAAT AAGTACTTAT 000640 000641 CATCATTGTG ATAATTAACT AAATTAATAG ACTCAAAGCC TTGAGAAGAG TGCCCAGCAC ACAGTAAGCA CTTGATAAAT 000720 000721 TACTTGGTGA ATACCCATCA AGATTATAAA CACAATTAAA AACAGTGTAG TGGCAGACCT GGGCCTAGAA CTCAGGTCTC 000800 000801 TCTGAAGCCG |
Predicted Small Protein
Name | NONHSAT029217_smProtein_119:340 |
Length | 74 |
Molecular weight | 8186.2809 |
Aromaticity | 0.0547945205479 |
Instability index | 66.9780821918 |
Isoelectric point | 6.89996337891 |
Runs | 14 |
Runs residual | 0.0476358815731 |
Runs probability | 0.0444078532314 |
Amino acid sequence | MANALNSVVKMPESNILQMGKLSPREANRLDLNHVTSEYQEKHSILWIIHSATQTGAQWH DLGLLQPPPPGFK |
Secondary structure | LLLHHHHHHLLLHHHHHHHLLLLHHHHHLLLLLLLLHHHHHHLLEEEEEEHHHLLLLHHH HLLLLLLLLLLLL |
PRMN | - |
PiMo | - |