NONHSAT029784
Revision as of 21:07, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT029784 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1888 nt |
Genomic location |
chr12+:88435485..88442200 |
Exon number |
5 |
Exons |
88435485..88436697,88437376..88437492,88439359..88439556,88440584..88440753,88442011..88442200 |
Genome context |
|
Sequence |
000001 AACGATAATA CAGTTTTAAT CTGGTTCTTC ATATTATTTA TCTGGATAGC TAATAAGTAG TACAGAATAT TTGGACCACT 000080
000081 GTGCAGCAGT TTCTTTATAA ACCTTGGATT TGTATACTTG AGAAAACTGT AAAAGATTTT TTAGACTTTG ATGTCTATTA 000160 000161 AGAAACTATA GTGTGTATCA TTATGCGTGA GGACGGCAAA CTGGGTTAGA ATTTAACTGC TAAACTCAAG TCACAGAACC 000240 000241 CAAAGTGACA ATGCTTACAA ATCCACATTT ATTACTACTA AAGAATTACT ACTAAATTAT TACTACTAAG GCATTAAAAG 000320 000321 TAAAGATGTG TATTATAGCC AAGGACTGTC TCACAGTAAG GAGTATGGAG AGGCCAAGTA AAAGCTACTA TTGTTCCCTG 000400 000401 CTTTAGAGCC TTGGCAGGAC ACATTTTCTT AGATCAGGAA CCACTTATGT GTGCAGGCAA ACAGCTTGGA ACCAGGGAAT 000480 000481 GCAAAATGGA CTCACAGCTG GAGATTTTTA TATTTTTGCT GGTCACGTAG GTAGGCAGCT GATGCTCAGC TTCAACAGCA 000560 000561 GAGCCCTCCA GGGTTCTCAG ACCAAGCTAT CAGTCTCACT CCTACCAATA AAGAATACTA GCACAGTGCC CTGCAACTCC 000640 000641 TCAGATCCAT GAGTACAAAT CAACATTATT AGTATTTTCA TGCCTTGATC AGGGGTCAGT GCCATGCAGA ACAGCTCAGC 000720 000721 CTGATTCCAG ATGTGTCAGA ATTAACCCTT ACAGCACAGT GTTATGTTTG GGGGGAAGGG GTGGGGTAAA TACAGTTATC 000800 000801 TGGTTATGTT TCCATTTTGA AGAGGTAGCT TCAGTTGTCC ATAAATGCTG CTAACTCATA CAATATGACT ATGCAGTGTC 000880 000881 CTTATAAAAA AGATCATATA TTTACTTTTT GTCTCATCCC CCTCATTCTT TAACCAGAGA AATAAGTCTT CTCATAGCAT 000960 000961 CAGGTACTGC TAGGAGGTAT ATATTCTTAG ACTCCATATT TCCCTTTGTC TTCTTTGAGA AATTAGCCTC CTGTTTGTTG 001040 001041 ACAAACTGTA TTCTGAAATG TCTTTCAAGA TAAGTTTTGT TTGCATCATA CTTTTCCTTT TGTTATTACT TTTTTAGATC 001120 001121 AGCCATACCT TTGGGCTCGA CTAGATAGAA AACCCAACAA ACAAGCTGAA AAAAGATTTA AAAATTTTCT ACATTCAAAA 001200 001201 GAAAACCCAA AAGaattttt ttGGAACGTT GAGGAGGACT TCAAACCAGC TCCGGAGTGC TGGATACCAG CAAAGGAGAC 001280 001281 AGAACAAATA AATGGGAACC CAGTGCCTGA TGAAAATGGA CACATTCCTG GTTGGGTACC AGTAGAGAAA AACAACAAAC 001360 001361 AGTATTGCTG GCATTCCTCT GTAGTTAATT ATGAATTTGA AATTGCCCTG GTACTAAAAC ATCATCCTGA TGATTCTGGA 001440 001441 CTTTTGGAAA TTAGTGCAGT GCCACTTTCA GATCTCTTAG AACAAACACT GGAACTCATA GGAACAAATA TCAATGGAAA 001520 001521 CCCATATGGG TTAGGGAGCA AGAAACATCC ATTACATCTT CTTATACCAC ATGGAGCATT TCAAATAAGA AATCTACCTT 001600 001601 CATTGAAGCA CAATGATCTC GTGTCCTGGT TTGAAGATTG CAAAGAGGGT AAAATTGAAG GAATAGTGTG GCATTGCAGT 001680 001681 GATGGCTGTT TAATAAAGGT CCATCGCCAT CATCTTGGCT TATGCTGGCC AATTCCAGAT ACTTACATGA ATTCAAGACC 001760 001761 AGTTATTATC AACATGAACC TGAACAAATG TGACTCTGCC TTTGATATTA AGTGTTTGTT TAATCATTTT TTAAAAATAG 001840 001841 ATAATCAGAA ATTTGTTAGA CTCAAAGATA TAATATTTGA TGTATAAA |
Predicted Small Protein
Name | NONHSAT029784_smProtein_446:529 |
Length | 28 |
Molecular weight | 3075.687 |
Aromaticity | 0.0740740740741 |
Instability index | 58.7 |
Isoelectric point | 5.93267822266 |
Runs | 5 |
Runs residual | 0.0214707461084 |
Runs probability | 0.0365836424661 |
Amino acid sequence | MCAGKQLGTRECKMDSQLEIFIFLLVT |
Secondary structure | LLLLLLLLLLEELLHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |