NONHSAT030618
Revision as of 21:11, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT030618 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1439 nt |
Genomic location |
chr12-:110171418..110174503 |
Exon number |
4 |
Exons |
110171418..110172398,110173396..110173626,110173967..110174101,110174412..110174503 |
Genome context |
|
Sequence |
000001 GACAGattaa acaccaacta tgtgccaggc caggccctgt gctagatgct ggggCAGTGA CAGACCCTGA GTGGATGGGA 000080
000081 GGCATCAGAG GGGTAAGTAG GAAAAAGCTA GGGGAAGGGA AGGATCCCAC AGAAGGGACT GCACAGGCCA CCACATGGAG 000160 000161 ACTTGAGAGA GAGGAGCAAA CAGAGAACAT GAAGGAGCTC CAGGCTGCTG GAGAGCAAAC CCTCCTGCAA AGAATGAGTG 000240 000241 GGGAGATCTG AGAATCGATA CTGAACAGCT TCAGTACTAC GATGTCATAA TGGGGCTGTG AGCTCAGCCG AAAGCCCCCC 000320 000321 GCCCAGTTTT TTTTGGAAGT GGTCATAGAA TCTCTCTGGA GAAACAACAT GGAAATGGAG ACCAAAAGAG GGAAGGAGGG 000400 000401 ATGCCACCAG ATGACACTGG GATCCCGGAA GACGGAACAC TGTGTGCAAC GGGCAAAGAA CTTTTCAAAA GGGATTTCAA 000480 000481 CCTCTGACCA CCTGGAGACA GGCGACTGGC GCTCATTGTA AATGCACCGA CATGACAGGG AACAGCTGCT GGGGAGGTGG 000560 000561 AGACGGGTGC CGGGAGAGAC AGGAAACCCC AGAGGCTTGG AAATCCAGGA GCCACAGGAA GCAGTGAGCT TTCTGCGGAG 000640 000641 CCGGATCCGG TGGAGccaat tcaccagcag gtcccggcag caactcttct acaacagatt cctgcccgtc cctgtgcccc 000720 000721 atcgcccccc tgccgtcaat ctccacctca agggagccag accaagcctt tctgtgtgta gcgcacatct ctcctgcgta 000800 000801 gagctcacct agtggcttcc atagcttttt tttttttttt tttggagaca gggtcttgcc ctgtcaccca ggctggggta 000880 000881 cggtggcatg atcatggctc actgcagctc cctcctgggc tcaagtgatc ctcctgcctc aacctctcaa gtagctggga 000960 000961 ctacagttgt gcaccacccc acccagctaa ttattatttt ttgtagatgt gggatcttgc tatgttgccc aggctggtct 001040 001041 tgaactcctg gcctcaagca accttctcac ttcagcctcc ctaagtgctg gaattatagg tatgagccat cccgccagtc 001120 001121 ttccgtggct tttctaacaa tatccttgaa ggacctctgt gaatcccttt cccaatgtct atctgcactg tccctgtccc 001200 001201 aggctgatcc tgctcagaca cgctggcttg ctttctggtc ctctcacaag ccaaccctgt ccccacccca gggcctttgc 001280 001281 acttatggtt ttgcctctac ctaaaTACCC TATACcagtg ctgtctgata gaaatatgta ataatggggg ccgggcgtgg 001360 001361 tggctcacac ctgtaatccc agcacttttg ggaggccgag atgggcagat cacgaggaca ggagatcgag accatcctg |
Predicted Small Protein
Name | NONHSAT030618_smProtein_521:811 |
Length | 97 |
Molecular weight | 11176.6864 |
Aromaticity | 0.0729166666667 |
Instability index | 89.4469791667 |
Isoelectric point | 11.4495239258 |
Runs | 17 |
Runs residual | 0.0428479381443 |
Runs probability | 0.0466972162474 |
Amino acid sequence | MHRHDREQLLGRWRRVPGETGNPRGLEIQEPQEAVSFLRSRIRWSQFTSRSRQQLFYNRF LPVPVPHRPPAVNLHLKGARPSLSVCSAHLSCVELT |
Secondary structure | LLLLHHHHHHHLLLLLLLLLLLLLLLEELLHHHHHHHHHHHLHHHHLLLLHHHHHHHHLL LLLLLLLLLHHHLLLLLLLLLLLLEEELEEEEEEEL |
PRMN | - |
PiMo | - |