NONHSAT031476
Revision as of 21:14, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT031476 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2087 nt |
Genomic location |
chr12+:122352124..122354549 |
Exon number |
2 |
Exons |
122352124..122353850,122354190..122354549 |
Genome context |
|
Sequence |
000001 GTACTCCCCC TGCtttaatt ttaatttttt aaattaaaGT ACTATATACA ggctgggtgt ggtggctcat gcctgtaatc 000080
000081 ccagcacttt gggaggctga ggtgggtgga tcacctgaga tcaggagttc aagaccagcc tggccaacat ggcgaaaccc 000160 000161 catctctatt aaaaatacaa aaattatctg ggcatggtgg cacgtgcctg taatcccagt tgctcaggag gctgaggcag 000240 000241 gagaattgct tgaaccgggg aggcggaggt tgcagtgagc cgagattgtg ccactgtact ccagcctgcg cgacagagaa 000320 000321 cccatctcaa aaaaaagaaa GTAATACATA CATgccaggt gtggtggcac atgcccaaaa tcccagcact ttgggatgct 000400 000401 gaggtgggca gatcacttga gcccaggagt ttgagaccag gctggccagt atggtgaaac cctgtctcta ctaaatatac 000480 000481 agaaacatta gctgagcatg gtgctgcatg cctgtagtcc cagctactca ggaggctgag gcacgagaat tgcttgaacc 000560 000561 taggaggctg aggttgcggt gagctgagat tgcaccacta cactccagcc tgggcaacag agcaagactc tgtctcagaa 000640 000641 aaataaaGCA ATACATACGC ATGGTTAAAA AATTAATGAT ATGGAAATAT ATAAAAGTAA ACATCTTCTT TTTCCAAAGG 000720 000721 ACTAGTCCTC TCTGGAAGTA ACCACTCTTA ACAAGTTTTT CCATGTTCTT CCAGAAAACT TCGCACACTA GAGCAACACA 000800 000801 GGTGTCCTTT TAGAAAATAT TATCggccgg gcacggtggc tcacacctgt aatcccagca ctttgggagg ctgaggtggg 000880 000881 tggatcacct gagatcagga gttctgagac cagcctggcc aacatggcga aaccctgtct ctactaaaaa tactaaaatt 000960 000961 aggcgggtgt ggtggcgggc acctgtagtc ccagctactc aggaggctgg ggcatgagaa ttgctagaac ctgggaagca 001040 001041 gaggttgcag tgagccaaga ttgtgccact gcactccagc ctgggtgaca gagtgagact gtgtctcaaa aaaaaaaaaa 001120 001121 aagaaagaaa aTATTATCAA ATAGGTTCAT ACTTTGGTGG GGTTTTGGTT TGTTTTGACT AAAACCCTTC ATTCTCTGTA 001200 001201 CTGTATTTGA ACAATAccta ttgatggaca tttctggtgt tttcagtttt tgaatttcta cacagtcctg gaatgaacat 001280 001281 ttcatttgta tgtctcGCTA ATTTTTATAC TTTTTGTAGA GTGCTGGGAT TACAGGCATT TGTATGTCTT GTAATTTGTA 001360 001361 TGTCATCTTG CAATTGTGTA CTATGTACCT TGGATGTACC TTTTAAAGAT CGTTGGTGGT GGGACACGTG TTTTTTGAGG 001440 001441 AAGATGGTAC TGAGGTCAGC ACCCTGGCTG CCCTGAGAGT GCagtgccac gttccccacc ctctcgccaa ccacaggatt 001520 001521 atgctgcaaa tgtaaatctt taccaatttg ataggcaaaa aatgggatct cagcatttta gcctgcatct ctgagtacta 001600 001601 acgaggctga acaCGAAATG AGCTTATTTT CTTTTCAGAA GCCCCTGAAT GTGACAGTGA TCCGCAGGGG GGAAAAACAC 001680 001681 CAGCTTAGAC TTGTTCCAAC ACGCTGGGCA GGAAAAGGAC TGCTGGGCTG CAACATTATT CCTCTGCAAA GATGATTGTC 001760 001761 CCTGGGGAAC AGTAACAGGA AAGCATCTTC CCTTGCCCTG GACTTGGGTC TAGGGATTTC CAACTTGTCT TCTCTCCCTG 001840 001841 AAGCATAAGG ATCTGGAAGA GGCTTGTAAC CTGAACTTCT GTGTGGTGGC AGTACTGTGG CCCACCAGTG TAATCTCCCT 001920 001921 GGATTAAGGC ATTCTTAAAA ACTTAGGCTT GGCCTCTTTC ACAAATTAGG CCACGGCCCT AAATAGGAAT TCCCTGGATT 002000 002001 GTGGGCAAGT GGGCGGAAGT TATTCTGGCA GGTACTGGTG TGattattat tattattttt aataaaGAGT TTTACAGTGC 002080 002081 TGATATG |
Predicted Small Protein
Name | NONHSAT031476_smProtein_68:277 |
Length | 70 |
Molecular weight | 7876.0233 |
Aromaticity | 0.0869565217391 |
Instability index | 85.1188405797 |
Isoelectric point | 8.36334228516 |
Runs | 10 |
Runs residual | 0.00559621179509 |
Runs probability | 0.047270800212 |
Amino acid sequence | MPVIPALWEAEVGGSPEIRSSRPAWPTWRNPISIKNTKIIWAWWHVPVIPVAQEAEAGEL LEPGRRRLQ |
Secondary structure | LLLLLHHHEELLLLLLLLLLLLLLLLLLLLLLEELLLLEEEEEELLLLLLHHHHHHHHHH LLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL LLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiii iiiiiiiii |