NONHSAT031553

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT031553

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1782 nt

Genomic location

chr12+:123465263..123467437

Exon number

3

Exons

123465263..123465359,123465676..123466426,123466504..123467437

Genome context

Sequence
000001 GCGGGCTGTC CGGCCCGCAG GGCGGTCGAG GTGGGAACGG AGCAGCCCCG GGGGCCCCCT TGAGGCGGCG AGGCCGCGAA 000080
000081 GGGCGCGGGG CTGGAGGCCC GCGGCGCCAT GGCTCACGTC GGCTCCCGCA AGCGCTCGAG GAGTCGCAGC CGGTCCCGGG 000160
000161 GACGGGGGTC GGAAAAGAGA AAGAAGAAGA GCAGGAAAGA CACCTCGAGG AACTGCTCGG CCTCCACATC CCAAGGTCGC 000240
000241 AAGGCCAGCA CGGCCCCTGG GGCGGAGGGT GAGGACCACA GGCATCGGGG AGAGGAGGCG CAGTTACTAC CCGGGGAAGT 000320
000321 CGGGCGAGCA GTGGTCGGGG ACGCTCAGTC ATGCCTCTGT GCAGCCGGGC CTGAGATGTG AGGGCCAGGC GCCGCAGGAG 000400
000401 CCAGGAAGGG GCTCCTCTGG GAAGCTCCAT CTCTGTTCTG GAAAGCCCCT CAGGAAGCGC TCACCCTGTA GCCGGTCTGT 000480
000481 GCCTGCCCCA GGCCAGAGCA GGGGACGAAG GTTTACCTCT TCCCCTCCTG GCCTTCCAGC CTCACCTTCT CCCTGCATCA 000560
000561 CAGAGAGAAG CAAGCAGAAG GCCCGGAGGA GAACAAGATC CAGctcctcc tcctcttctt ccagttcttc tagctcctct 000640
000641 tcttcctcct cgtcctcctc ctcttcctcc AGTGATGGCC Ggaagaagcg ggggaagtac aaggacaaga ggaggaagaa 000720
000721 gaagaagaag aggaagaagc tgaagaagaa gggcaaggag aagGCGGAAG CACAGCAGGT GGAGGCTCTG CCGGGCCCCT 000800
000801 CGCTGGACCA GTGGCACCGA TCAGCTGGGG AGGAAGAGGA TGGCCCAGTC CTGACGGATG AGCAGAAGTC CCGAATCCAG 000880
000881 GCCATGAAGC CCATGACCAA GGAGGAGTGG GATGCCCGGC AGAGCATCAT CCGCAAGGTG GTGGACCCTG AGACGGGGCG 000960
000961 CACCAGGTGG GGAGCTTTCG GCCTGACTTA CACCACAGGA TCTGGGAGTG TTGGCTGAAG ATGTGTGCTC TCGGGAGGAG 001040
001041 TGGGGCCGGG CGGGGTTCCT GGTGCCTGAA AAAGGCCAAA TGTGGGCAAA AATACGGTCA CTTGGAGTAA GTAGTTGCAG 001120
001121 GGGCTGGAAG GGCCTGGAGG AGGCTCTTGA AAGGGCTGTT GTTGGCCGGG CTGAGGCTGG CAAGGCAGAG CCCAGCTCCA 001200
001201 CTGCCTTCAT CAGGGAGAGT GGGTGAGGCC CCAGGGTCTG TCCACTCAAG GCTGCGGGGT GGGAGCCCTG GGACCCCTCT 001280
001281 GCCGGCTGCT TGTGGTTCTG CTCCTCTGGC ATTAGGGGAC CTGCCTATTC CTTgctgaac ggagaccctc ccacccccag 001360
001361 gcttattaag ggagatggcg aggtcctaga ggaaatcgta accaaagaaC GACACAGAGA GATCAACAAG GTGGGTGTGG 001440
001441 CCCCTCTGCC TGCCATCCGC CCCCAGCTCT GTTTGTGATG TACCCCTCCT CCTGTGTGCT TTCTTCCCCA GCAAGCCACC 001520
001521 CGAGGGGACT GCCTGGCCTT CCAGATGCGA GCTGGGTTGC TTCCCTGAGG GCCCCCGCTG GCCAAGGCCT GTGGACGACG 001600
001601 CTGGCGGCCC AGCCTGGGCA GGTTTCAGGG TGCCAGTGGG AAGCCTGATG GGTGCTGGTG GCCTTTCCCC CGTGGATTGG 001680
001681 TCTCTGGCCC AGCCCAGTCT CTTCTCAGGG GCAGGGGGTG GAGGTTGGGG TCACCGGCCT GCTTGGCACC CCCATCTGAA 001760
001761 AGAGCAGCAC TTCTCAGCTA TT
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Predicted Small Protein

Name NONHSAT031553_smProtein_1079:1225
Length 49
Molecular weight 5135.7942
Aromaticity 0.0625
Instability index 43.1875
Isoelectric point 9.18182373047
Runs 9
Runs residual 0.0219298245614
Runs probability 0.0254960843196
Amino acid sequence MWAKIRSLGVSSCRGWKGLEEALERAVVGRAEAGKAEPSSTAFIRESG
Secondary structure LEEEELLLLLLLLLLHHHHHHHHHHHHHLHHHLLLLLLLLLLEEEELL
PRMN -
PiMo -