NONHSAT031553
Revision as of 21:14, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT031553 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1782 nt |
Genomic location |
chr12+:123465263..123467437 |
Exon number |
3 |
Exons |
123465263..123465359,123465676..123466426,123466504..123467437 |
Genome context |
|
Sequence |
000001 GCGGGCTGTC CGGCCCGCAG GGCGGTCGAG GTGGGAACGG AGCAGCCCCG GGGGCCCCCT TGAGGCGGCG AGGCCGCGAA 000080
000081 GGGCGCGGGG CTGGAGGCCC GCGGCGCCAT GGCTCACGTC GGCTCCCGCA AGCGCTCGAG GAGTCGCAGC CGGTCCCGGG 000160 000161 GACGGGGGTC GGAAAAGAGA AAGAAGAAGA GCAGGAAAGA CACCTCGAGG AACTGCTCGG CCTCCACATC CCAAGGTCGC 000240 000241 AAGGCCAGCA CGGCCCCTGG GGCGGAGGGT GAGGACCACA GGCATCGGGG AGAGGAGGCG CAGTTACTAC CCGGGGAAGT 000320 000321 CGGGCGAGCA GTGGTCGGGG ACGCTCAGTC ATGCCTCTGT GCAGCCGGGC CTGAGATGTG AGGGCCAGGC GCCGCAGGAG 000400 000401 CCAGGAAGGG GCTCCTCTGG GAAGCTCCAT CTCTGTTCTG GAAAGCCCCT CAGGAAGCGC TCACCCTGTA GCCGGTCTGT 000480 000481 GCCTGCCCCA GGCCAGAGCA GGGGACGAAG GTTTACCTCT TCCCCTCCTG GCCTTCCAGC CTCACCTTCT CCCTGCATCA 000560 000561 CAGAGAGAAG CAAGCAGAAG GCCCGGAGGA GAACAAGATC CAGctcctcc tcctcttctt ccagttcttc tagctcctct 000640 000641 tcttcctcct cgtcctcctc ctcttcctcc AGTGATGGCC Ggaagaagcg ggggaagtac aaggacaaga ggaggaagaa 000720 000721 gaagaagaag aggaagaagc tgaagaagaa gggcaaggag aagGCGGAAG CACAGCAGGT GGAGGCTCTG CCGGGCCCCT 000800 000801 CGCTGGACCA GTGGCACCGA TCAGCTGGGG AGGAAGAGGA TGGCCCAGTC CTGACGGATG AGCAGAAGTC CCGAATCCAG 000880 000881 GCCATGAAGC CCATGACCAA GGAGGAGTGG GATGCCCGGC AGAGCATCAT CCGCAAGGTG GTGGACCCTG AGACGGGGCG 000960 000961 CACCAGGTGG GGAGCTTTCG GCCTGACTTA CACCACAGGA TCTGGGAGTG TTGGCTGAAG ATGTGTGCTC TCGGGAGGAG 001040 001041 TGGGGCCGGG CGGGGTTCCT GGTGCCTGAA AAAGGCCAAA TGTGGGCAAA AATACGGTCA CTTGGAGTAA GTAGTTGCAG 001120 001121 GGGCTGGAAG GGCCTGGAGG AGGCTCTTGA AAGGGCTGTT GTTGGCCGGG CTGAGGCTGG CAAGGCAGAG CCCAGCTCCA 001200 001201 CTGCCTTCAT CAGGGAGAGT GGGTGAGGCC CCAGGGTCTG TCCACTCAAG GCTGCGGGGT GGGAGCCCTG GGACCCCTCT 001280 001281 GCCGGCTGCT TGTGGTTCTG CTCCTCTGGC ATTAGGGGAC CTGCCTATTC CTTgctgaac ggagaccctc ccacccccag 001360 001361 gcttattaag ggagatggcg aggtcctaga ggaaatcgta accaaagaaC GACACAGAGA GATCAACAAG GTGGGTGTGG 001440 001441 CCCCTCTGCC TGCCATCCGC CCCCAGCTCT GTTTGTGATG TACCCCTCCT CCTGTGTGCT TTCTTCCCCA GCAAGCCACC 001520 001521 CGAGGGGACT GCCTGGCCTT CCAGATGCGA GCTGGGTTGC TTCCCTGAGG GCCCCCGCTG GCCAAGGCCT GTGGACGACG 001600 001601 CTGGCGGCCC AGCCTGGGCA GGTTTCAGGG TGCCAGTGGG AAGCCTGATG GGTGCTGGTG GCCTTTCCCC CGTGGATTGG 001680 001681 TCTCTGGCCC AGCCCAGTCT CTTCTCAGGG GCAGGGGGTG GAGGTTGGGG TCACCGGCCT GCTTGGCACC CCCATCTGAA 001760 001761 AGAGCAGCAC TTCTCAGCTA TT |
Predicted Small Protein
Name | NONHSAT031553_smProtein_1079:1225 |
Length | 49 |
Molecular weight | 5135.7942 |
Aromaticity | 0.0625 |
Instability index | 43.1875 |
Isoelectric point | 9.18182373047 |
Runs | 9 |
Runs residual | 0.0219298245614 |
Runs probability | 0.0254960843196 |
Amino acid sequence | MWAKIRSLGVSSCRGWKGLEEALERAVVGRAEAGKAEPSSTAFIRESG |
Secondary structure | LEEEELLLLLLLLLLHHHHHHHHHHHHHLHHHLLLLLLLLLLEEEELL |
PRMN | - |
PiMo | - |