NONHSAT031927
Revision as of 21:16, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT031927 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2223 nt |
Genomic location |
chr12+:129594174..129597839 |
Exon number |
2 |
Exons |
129594174..129596214,129597610..129597839 |
Genome context |
|
Sequence |
000001 ATTTTTCTCT TGCTGCCACC ACGTAAGAAG TGCCTTTCGC CTCCCGCCAT GATTCTGAGG CCTCCCTAGC CATGGGGACC 000080
000081 TGTAAGTCCA ATGAAACCTC TTTTTGTTCC CCGTTTTGGG TATGTCTTTA TCAGCAGCGT GAAAACGGAC TAATACACCC 000160 000161 TCTCCCTACC AGCGGGTGTA GTCTGATGAG GTCTATGCGG CAGCGTTGGG TGGCAGCCAT GGAGGAATGC TGTTGAAATG 000240 000241 TCCCTTCTGT CCTCAGGGGC CTTCAGAAGC CACCTGGTCA GTGTCCGAGC ATGGCCAAGG TGCAGGGTGG CTGCTGGGAC 000320 000321 TCCATGCAAG GCTCCTCTAT GGGCAACCTC TGCGGCAGCA TTTCCTGCTT GGCTGCCCAA GGATTCCCAG TGCTTCCTGC 000400 000401 AGTCAGGCAC TTCCTGCCCG GTTCTCCCTC CTTCCCATCC TCCTTTCCCA GGGACCAGAC CTGCATCGCA TCCTGAAGCT 000480 000481 CAGCCTGCCT ACTCCTTCTC CATCTTTTCT TTATCCTTCA CAACTGCAGT CCTCAATTAA TCTCTGGTGC ACTTAACTCT 000560 000561 GTCTGCTTCC TGAAGATGCT CATAGATTCT GAGGATTCCC CATGTGCTGT GATGTGAGAG TTAGGGGCGA GGGAGGAAAA 000640 000641 CAGCCAGCTC CACTACCTGT CTACCCTCCC TCCCGACCAT TGAGAAAGTT CCCTGTTAGA GATTCATTCC TTTGGACCAT 000720 000721 GAAGCCTTTT GATTCCTATT AACCTTGAGT GAGTCACGCT TAAGCCTTTT AAAAAATTTT CTGAGTTTTT GTTTGTGAAA 000800 000801 TATAACATAT ATACCAATGA ACATGAGATA TATAAATGCG TTGTATGAAT AATTAGAAAG CAAACTATAT TCCAGCAAGC 000880 000881 GAAAACATAA CACACTGCCC CAGAAGCACC CACAATCCAC GAGTAAGCAC CTCCCTCCCC CTGAGGTGCA TAAGTAAGGA 000960 000961 GAGGAGGGGC AGAGGAGCTG CCAGGGGAAG GACCAAGGAT GTGCTCTATA GGTCAGCCCC CTGGCTCTGC CTCTCCTTGT 001040 001041 TGGCAGAGAT CAGCCTGAGG GCCGCGCCGC ACACCACAGG CCCATGACCC TCCATCGGAG TCACCGGGCG CTGGCTGAAC 001120 001121 AAGCACCTTC AGTGAGCTCT GGATTACAAC ACAGCTATGA AAAGAAGCCA GCCGGTGCTC TCCCTACCCA TATGGAGAGA 001200 001201 TTGCCAGGCA GATTCCAAAG TGGAAAAGTC AGAGGCAATA CAGGAGGGCC TGTGTGCCCA GCTCCCACTG TGAAAACCAA 001280 001281 CCCAGCTGAT GGGGATTCTT CTCTATTGCT TTGTAGGTCG TCGCTGCCCT CAGCCTCCAG ATGCAGCCCC CCTGCCACCT 001360 001361 TCAGGACCCC TGGCTCTCCC CTGGACTCAG TAGCGAAAGG GTTTATGTGC TCGGAGGGAG ACCTTCAGGA ATCTGTGCAT 001440 001441 AGAATGCCAT AGTGCAGAGG AAAGTAAGAC TATGCAGTTG TATTTGACTT AAAACCTCCG GAAAGATAAA TAGGGAAGCA 001520 001521 ACAAAACCTA CAGGGAACAG GGGAGGAAGA GGGATGGGGC TGCAAGCCAG GGGATGCCTG CAGCCACCAG GAGATGGGGG 001600 001601 GAGGCAGGGA GGATCCTTTC CCAGAGCCTC TGGAAGGAGT ATGGCCCTGC CTACACCTTG ATTTGGATTT CTGGCCTCTG 001680 001681 AAACTGTGAG AGAACAACTG TCTGCTGTGG AAAGTAACCT AGGTTTGTGG GAATTCGTTA CAGCAGCCCC AGAAAATGGA 001760 001761 ACAGCTGCTA AGTGAGACTC CTCAGCCAGG CCAGAGAATG TGCATTCTGA CGGACTGCTT CTCATTTGCA CTGATCACTG 001840 001841 TGAGTGTCTG ATGGGTGGGC ATCCGGCGCC CAGAGAAGGA GTTGCTCTAT TATCCTGGCA CTCCATAAAG AACAGGTAGA 001920 001921 AATAAGCGCT TCTTACCAAG ATGAAATCCA CCCATCATTT CTGAATGGCT CAGTTTTGAT TTCATCTCCC AAGGTCTTCT 002000 002001 TTCTGAAACC AGCCCAACTT TTCTCCCAGA GAGTATCATG GAACTGAACT TTCAAGATCA TGGCATCTGG ACATCGAGAA 002080 002081 AACGGAACCC TCATCTGGCC ACCTGCTGCT TTTTGACCAA TTCCCATATA AACCGCTAAC TTCAGTCAGT TGGAGGGATG 002160 002161 GATTTGAGAT TTGCCTTCTG TCTCTCAGGT GATGTCACCA GCAATAAAGC CTTCTTCCCT GGC |
Predicted Small Protein
Name | NONHSAT031927_smProtein_290:475 |
Length | 62 |
Molecular weight | 6319.2125 |
Aromaticity | 0.0819672131148 |
Instability index | 67.5590163934 |
Isoelectric point | 7.68682861328 |
Runs | 7 |
Runs residual | 0.0380629357452 |
Runs probability | 0.0407676584147 |
Amino acid sequence | MAKVQGGCWDSMQGSSMGNLCGSISCLAAQGFPVLPAVRHFLPGSPSFPSSFPRDQTCIA S |
Secondary structure | LLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLLLLHHHHLLLLLLLLLLLLLLLLEEEE L |
PRMN | - |
PiMo | - |