NONHSAT032071

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT032071

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

2532 nt

Genomic location

chr12-:132849279..132851810

Exon number

1

Exons

132849279..132851810

Genome context

Sequence
000001 ATGTTTTATG GGAAGGAGGA GGGAAGCGGC TGAGCAGGGC AAGAGCGAAA GTCCACTGCC TGGCAAGGAC AGCCTAGACA 000080
000081 CGGGGGAAAG AAGGGACATG GAGGGGCTGA GCCCTGTCAC ACGTCATGCC CTGCATGCCG GGCTGGACAT GGAGAAGCTG 000160
000161 AGCGTGCAGT CTGGAGCTGA GGCTGGGAAG CCCTGATACA TGGCTTAGAA GTGAGTTGGT GACAACTGGA CGGTTCCCCA 000240
000241 GCAGGGGCAA GCACCAGAGT GATGGGAACA GCCCCTGCTG CCAGGAGCCC ACGGGGGGAG TGTGCACGTG TGTGCGTGTG 000320
000321 TGTGGTGTAT CCTGTGTGCA CGTGGTATGT TCATAGATGT GTAGTGTCTG TGCATGTGTG CGTGTGTGTG GGGTATGTTC 000400
000401 TTGTGTGTGG CATATGTTCA TGTGTGCGTG TGTGTGGTGT CTGCTTATGT GTGCATGTGT GTGTGGTGCT GTAGCTTCTA 000480
000481 ATTCAGCCCA AGCCACAACT TAGACTTTTA ATGTTACGTT CAAACAAAAC CATTTGGAGA CTCACCCACA GCTCTGAGGC 000560
000561 TTTGGACGAC GCCCGCTCAT CACCTGCCTT CCCCTCTGCT GAGTGCAATG AATTCAAGCT CCATAAAGGC CACACATGGA 000640
000641 GCCCTGTGTG CGTCTACAGT TCTGGGTCCC GAGATGAGGC GGTGAAACAG CAAACCCACA CCCAGAACCC CTGCCCCAGG 000720
000721 AGCCCCAGCC AGCAGGAGAG CAGGGCAGGG GTGCAAAGAG CAAGCCGGGG GTGGGGGTGG GAGAGGCAGA GCAGCAGGCT 000800
000801 GGAGGCCGGG GCTCTGGTGG GATTTTACGT TGAGCACGGG GTGAGCCTCT TGAAGGGTGA GGGCGTGTGT GGCCATCCAG 000880
000881 GTGGGGGTGG GGAGCGCAAA GGCCCTGGGG CAGGAGCAGG CCTGGAGCGC AGGCCACAGA GCCAGGGGCC GGGCGCAGGT 000960
000961 GAGTGAGCCA AAGGGAACCA AGAGGGGATG GTGGAGGGAG CGGCCTGGCT GAGCAACCCG GGGCTTTGAC CTTCTCAGGG 001040
001041 GCAATGGGAA GCCTGGAATT GCATGGGCTG GTGTGGAGGT CACCGTGACC TTGCCAGGCC TGGGGGTGCA GCCGCAGTGC 001120
001121 CCAGGGAGGT GAGAAGGGGC TGGCCAGGCT GCCTGTTGTG AAGAGCGGAG AAGTATGAGA GAGATGTGGA GCAGGGCGTC 001200
001201 TGGCTTTTCT CTGACCTGCG ATGGGCTGGT GGGAGCAGGA GCGAGCTGGC CTCACTGTGA ATGTGAAAAT GCTGGTTGGA 001280
001281 GCACACCACG GTGGGTACTT CCTTCAACGG CTAAATGCGC CGAAGGCCTC CAAGCTTGAC AGGGTTGAAT TTCCTCCAAG 001360
001361 GCCCTGGGAG GGGCGCCCTG TGCTCCCTGG ATGGGGCCGA CATTCCTGGC CTGTCCCCAG CTGCGTCGCC TCTGCCCAGC 001440
001441 CCTCAATCAC TGCAGCTCTC AAGTGGTCCT GGGTGCCGTG ATCTTGCTGA ACTCTGATGC TTTCCAAATA CCATAAACTT 001520
001521 AGTTTATTTT CTGTCTGACA GAAACGGCGC CACTTAAGTC CTGCAAAGAA CCCTCGGGTT CCACTCAGGC TGAGTTATTC 001600
001601 GGGGGCCACT GCTGAACGGT TTGCATTTGT TTCCTCTGTG ACATCGGAGT GGGGAGGACG CTGCCTCCAG CACAGGGCCA 001680
001681 GGGGCCAGGG CTGCTCACAC AGAGCTGCTG GAGCCTACAG GGTCCCGGCT GTGGGTCCTG GGCTGCCCGC CCCCAGGAAG 001760
001761 GGCACCTTGC CACCATTGAA GTGGGGCGAG CTGATTCGGG CACAGCTGGA AACCAGGAGG CAGCCAGCAG CAGCGGCCCT 001840
001841 GAGCAAGAAC AGGAACCCCA GGCCGAGGCG GGCGCATCAC ACGAGACCAG CCTGGCCAAC ATGGTGAAAC CCCGTCTCTA 001920
001921 CTGAAAATAC AAAAATTAGC CGGGCATGGT GGCACCCACC TGTAATCTCA GCTACTCGGG AGGGTGAGGC AGGAGAATTG 002000
002001 CTTGAACCCG GGAGGTGGCG GTTGCAGTGA GCCGAGATTG TGCCACTGCA CTCCGGCCTG GGCAACAGAG TAGGACTCTG 002080
002081 TCTCAAAAAT AAAGAAGAAA GAAAGAAGGA GAGTCCGGAA GCCACTGCTG CCCCCACCAG CAGAGTGGAA CTGTGATTTC 002160
002161 ATAGAACAGA CACAGCCTGG CAGCGAGAAT GACCACAGTG CTCACAGCCA CTCAGGTGGA ATCTCAGGAA CTCAATGTCA 002240
002241 GGAGGAGGAG TGGGGCCCTA AGGCCCGTGT GCGGGAGACA GTGGCCATGG CGTCGAGCTC AAAGGTGAGC CGGGTGTGGC 002320
002321 TGGGGATGGG AAGGCGTGGC GCAGAGCCAC GGGGAAGGCA CACGAGGTCC AGAGACGGCA GCCTGCGAAG TGGAGGGAGG 002400
002401 GTGGACGCCG GGGTGATCAC CCACTTTCCT AGACTGAGCG TTGGGCACAG GCTTTGTATT GCTTCATTCA TCGTCATATT 002480
002481 TGATGTATGT TTGATAAATA TCCCTTTAAA AATTAAAGAC AGTTTGTTAA TT
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Predicted Small Protein

Name NONHSAT032071_smProtein_1220:1480
Length 87
Molecular weight 9669.0638
Aromaticity 0.116279069767
Instability index 48.7709302326
Isoelectric point 10.1679077148
Runs 12
Runs residual 8.67754251998e-05
Runs probability 0.0294412059118
Amino acid sequence MGWWEQERAGLTVNVKMLVGAHHGGYFLQRLNAPKASKLDRVEFPPRPWEGRPVLPGWGR
HSWPVPSCVASAQPSITAALKWSWVP
Secondary structure LLLHHHHLLLLEEEEEEEELLLLLHHHHEELLLLLLLLLLEEELLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLHHHHHHHHHHLLL
PRMN -
PiMo -