NONHSAT032224
Revision as of 21:17, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032224 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1098 nt |
Genomic location |
chr13+:19479579..19500881 |
Exon number |
6 |
Exons |
19479579..19479716,19480167..19480250,19480637..19480798,19481775..19481942,19483110..19483206,19500450..19500881 |
Genome context |
|
Sequence |
000001 GGCTTAGAGA ACAGGAAGTG GGAGCCACAT ACCCCGAGCT GGAGGCTTGA GCCTATGGTA TCTAGGCTCG CCTCACTGCG 000080
000081 GTAGGTGGAG GTGATGGAGG TTGCAGCTTG GCCAGCATGG TAGAAAGGTG GCAGGGTAGA CTCTAGATTC TAGCGGGCAA 000160 000161 CCTCTGTTTG CTCGTGCTGG AGCGTGGCAG GCGCACAATG TTTCCTTGGG AATCCTCAGC AGGGCACGTC TGGCTTTTAC 000240 000241 CACCCAGTTG CTTCGAGCCA GGAGATGGAG GAGTCATCTG TTGCACGCTG GAGGCTGGAG CCTGCAGATG GCATGGTTCT 000320 000321 GTGGCTCACC TCGCTGCAGT TGGTGGCAGA GACAGAGACT GCAGCTTGAC CAGAGTGGTG GAGTGAGTAT TGTCATCTGC 000400 000401 ATGAGCAAAT CTGGTTCATC ACATCTTTGC AACAGGAAAA GGAAGGGAGG ATCATGTGTA TAATGTTTTA AGGCCAAGAT 000480 000481 TCACAACAAG AACAAAGTCT TTATTAACTT TTGCCTTCAA GAACCTGCAG TGTTGAGCCC TTTTTTATTT CTGGTTGGAG 000560 000561 TGCAGTGGCA TGATCTTGAC TCACAGCAAC CTCCACCTCC CGGGTTCAAG CCATTCTCTT CCCTCAGCCT CCTCAGTAGC 000640 000641 TGGATTACAG ATATGTATCT CAAGAGCACT CCACAACAAA GATTCTGCCT GCAATCCTCC ACTTCAAGGT CTGTTGCCAG 000720 000721 GAAACCTGTG TAACACAGTT ATGCATAGAG TGGTCTTAGG AAGCTGACTC TAACATGAAA ATTTAGAGTT GGATCTTTTG 000800 000801 CTGACATATT GAATATTCAT AAGAGCATAT GATACATTAG TCTATCATAA ACATGTCATT TCAAAAAACC CTCAAAGTTG 000880 000881 CCTTGTAGAA CATAATTTTA AAACTAGTGT GTAGGAATAT TTCATATCAG TTATTCAGTC TTCTTAATAT CTGAACCGAA 000960 000961 ATTAATCTTC CATTCTGCTT TTATTTATAA ATAATGATTT ATTGTCAGAT TCAATAATTT GTATTTTCAT TTATTCTAAG 001040 001041 GTAGGAAATA CCAGCATAAA AATAAATTAT TTGAAACAAA TCAAAAAAAA AAAAAAAA |
Predicted Small Protein
Name | NONHSAT032224_smProtein_569:766 |
Length | 66 |
Molecular weight | 6766.7903 |
Aromaticity | 0.0 |
Instability index | 69.3107692308 |
Isoelectric point | 8.68756103516 |
Runs | 9 |
Runs residual | 0.0118269230769 |
Runs probability | 0.0333961412392 |
Amino acid sequence | MILTHSNLHLPGSSHSLPSASSVAGLQICISRALHNKDSACNPPLQGLLPGNLCNTVMHR VVLGS |
Secondary structure | LEEEELLLLLLLLLLLLLLHHHHHHHHEEEEHHHLLLLLLLLLLLLLLLLLLLLLLEEEE EEELL |
PRMN | - |
PiMo | - |