NONHSAT032247
Revision as of 21:17, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032247 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1040 nt |
Genomic location |
chr13-:19622134..19636808 |
Exon number |
6 |
Exons |
19622134..19622426,19624099..19624260,19625301..19625540,19627405..19627538,19630573..19630708,19636734..19636808 |
Genome context |
|
Sequence |
000001 TGGAAGAGGA GGAGGCCCCC GACATCGGCA TATACCACTG CCCAAACTAT GAGAAAACCC ATGTGAAGTC CACCTTGTTA 000080
000081 AAGACATAGT GGCCCATGTG CCGGACAGTC AGCTCACGCT GGGCCACATG GAGGAGCACA GCTTCACCGA GCCCATCCTC 000160 000161 ATCCCTAAGA AAGACGGGCT GGGCTTGGCT GTCCCGGCCC CCACGTTCCA Tgcaggccag gcgtcctgtg ttttcatttg 000240 000241 ctaatctggc caccctCGCT AAGGCCTGTC ACCTGGCCAC CTCGCAGCAT CACCAGGTCA GAGGAAGAGT GGTCGGGGCA 000320 000321 CTTCACTGAG CCAAGAGAAA AGCAGGGGAC ATCAAAAAGG GAGTCCCAGG TTCCCTCACC ACCTTCCTGT CCCACCCCAA 000400 000401 GAATGTCCAG CTTCGTGGAG CCACCTGACA CCATGAAGAA ACTGTTCCGG GTAGAAAACT GGCCAGATGA TGCATTGCTG 000480 000481 GCCAAGCCCA AAGTGACCAA GTCCTGCCTG ATCTGTGTGA AGGACAGCTA CACCGACTTC CACATCGACT GTGGGGGCGC 000560 000561 CTCCGCCTGG TACCACGTGC TCAAGGGGGA GAAGACCTTC TATCTCATCA GGCTGGCCTC GGTCGACATC TCCTGTATGA 000640 000641 GTGCTGATAG TCTGCCGCTA ACCACAGCGA GATGTTCTTT GCTGACCAGG TTCACAAATG CTACAATTGC ATCGTCAAGC 000720 000721 AGGGCCAGAC CCTCTTCATC CCCTCAGGCA CTGACAGAGC TCTCGTGGGC CCCGAGCCCT GCAGCCTCCC AGGGCGGTTG 000800 000801 TCCCCTGGTC CACTTCAGCT ATGCAGGGCC CAGTGGGGAA GCCTGAGCTG GTGTGTCTGG GGCTTGGACC CACCCCCATC 000880 000881 GTCGCCTGCT TGATGGTCAG TGCACTGAGA ATGGCTCTTT GGTGGCTTCC AGAGCATATG AAGTTGAAAA GAGGTTGAAA 000960 000961 CTAGGCAGCC TGACTCAGTT TCCCAACTTC AAAACTGCCT GCTGGTACAT GGGGAAGCAC CTGCTGGAGG CGTTCAAAGG 001040 |
Predicted Small Protein
Name | NONHSAT032247_smProtein_95:328 |
Length | 78 |
Molecular weight | 8584.7898 |
Aromaticity | 0.0779220779221 |
Instability index | 80.0324675325 |
Isoelectric point | 12.369934082 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0366141542613 |
Amino acid sequence | MCRTVSSRWATWRSTASPSPSSSLRKTGWAWLSRPPRSMQARRPVFSFANLATLAKACHL ATSQHHQVRGRVVGALH |
Secondary structure | LLEEELLLLLEELLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLHHHHHHHHHHHHH HHLLLLLEEEEEELLLL |
PRMN | - |
PiMo | - |