NONHSAT032609
Revision as of 21:19, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032609 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1206 nt |
Genomic location |
chr13-:26698247..26699370 |
Exon number |
1 |
Exons |
26698247..26699370 |
Genome context |
|
Sequence |
000001 AGCGGCCCAA ATCTCCAGTA CTTTTTCTGC TCATAAAAAT CTGATTATTT GCTAATCCTT TAGAATGTAT GGTTTCTATT 000080
000081 GACAGTTGGA AAAGGATCAC TTCATTCACG CTGCCTAGTC AAGTGACCCT AGCCTCTTTA GGTAAGTGAT TCAATATATT 000160 000161 ATTAATAAAA GTTACCTTTG GTTCAAGCTT TGAAAATAAA TTATATTGTT TATGTAGGTA AAACACAAAG ATCAGAAATC 000240 000241 AATGACATTT GAAACAGCAA GACGAAAGGG AGTTTAACAT CCAGCATATA TGAATAACTA CAACCCTACA GAAAAAAAAT 000320 000321 CCAGTTCAAA ACTCGGCAAA GGATTTGAGT AGACATTTTT TCCAAGAAGA TATACAAATG TCCAAGGAGT ACGTGAAAAG 000400 000401 CTTCTCAGCA TCATTAATCA TTAGGAAAAT GCAAATCAGA ATCACAATGA GCCATTACCT CATACCCATT AGGATGGCTA 000480 000481 TTTTTTTAAA GCAAAAAAAA AAAAAAGGTG TAGCTGCTAT GGAAAATAAT ACGCTGGTTC CTCAACAAAA TAAATATAGA 000560 000561 ATTACCATAT GATCCAGTAA TTCCACATTT AGGTATATAC ACAAAAAAGC TAAAAGCAGA ACCTCAAAGA GGTCTTGTAT 000640 000641 ACCAATGTTC ATAAAATCAT TATTTACAGT AGCAAAACGG TAGAAAAATC TCTAATGACT ATCAGTGGAT GAATGGATAA 000720 000721 ACAAAGTATG GTCTATCTAC ACAATGAAAC ATACCCAGTT TTAAAAAGGA GTGAAATTCT GATGGATGCT ACAACATAGA 000800 000801 TGAACCTTGA GGCCTTATGC TAGATGAAAT ATGCCAGACA CAAAAGGACA ATTATTGTAT GATTCCACCT ATCTGAAATA 000880 000881 CCTGGAATTC TCATATTCAT AGAGACAGAC AGTAGAATAG TGGTTTCCAG GATGGGGAAA AGAGGAGAAC AGGAAGTGAT 000960 000961 TGTTCATAGA TATGGAGTTT CGCTTGGGAT GATGAAAAAG TTCTGGAGAT GATGGTGGTG ATGACTGCAC AACAATGTGA 001040 001041 ATGTACTTAA TGACATGTAA AAATGGTTAA AATGGTAAAT ATTATCTTAT GTATATTTTA CCAATAATAA AAATACTTTA 001120 001121 ACACTGAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 001200 001201 AAAAAA |
Predicted Small Protein
Name | NONHSAT032609_smProtein_377:571 |
Length | 65 |
Molecular weight | 7529.0812 |
Aromaticity | 0.078125 |
Instability index | 45.184375 |
Isoelectric point | 10.655456543 |
Runs | 11 |
Runs residual | 0.02328125 |
Runs probability | 0.0378587143294 |
Amino acid sequence | MSKEYVKSFSASLIIRKMQIRITMSHYLIPIRMAIFLKQKKKKGVAAMENNTLVPQQNKY RITI |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHLLLLLEEELLLEELLLLLEE EEEL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL LLLL |
PiMo | ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiii iiii |