NONHSAT032777
Revision as of 21:20, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032777 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1587 nt |
Genomic location |
chr13-:30914407..30948036 |
Exon number |
5 |
Exons |
30914407..30915605,30937298..30937363,30941738..30941854,30946422..30946511,30947920..30948036 |
Genome context |
|
Sequence |
000001 TCTTTGAAGG TGGGGAAGGG GTGAAGATGG TGAGGGGATT CCACGGCTGG GAGAGGTACA CTCCCTACAC GTTCTAACCA 000080
000081 ACTGGCCGTG GGGAGGAAGC TGGAGGTCAG GACACAGCAA ATGGGGGATC TCAGAAGTCT TAATGAAGTA ACTATCCCTG 000160 000161 AACACTGGGA TCAATACTCA GCATCCAGCT GTCAAATCAA CACCAAGCGT TTCACTCGTC GCCCAGCCTA GAGTGCAATG 000240 000241 GCGCTATTTC GGCTCATTAT AACCTCCGCC TCCCGGGTTC AAGCAATTCT TCTGCTTCAG CGTCCCAAGT AGCTGGGATT 000320 000321 ACAGCCGCCT CCTGGAGCAG ATTGTTAAGC TGATGCGAGT CTGGGCTCTG CCTCACCACT TGTCTCAGAG GAATCTCGGC 000400 000401 CAAGAAGACA GGGACAAGCT CCCAACTCTG ACTACCCCTT TTACAGGGAA AAAAAAAAAA TCCCGTGCCT TCTTTGCAGC 000480 000481 AAGTGACAAA TCCTTGTCAT ATCGAGATGG CTTTTCCTCC TCCTCTTCAA ACATCTTTTA GCAGCAACAG CAGCTCAAGT 000560 000561 AACTGGAATT ATTTCAGAGT TAAAATGCAG GCTTTGTAGA CCCTCTTAGA CAGACAGATT CAATTTCAAA GGAAACTTCT 000640 000641 TTGGCTGGGT ACTCAGTGAG TGTTACACAG GGATTTGGGG AGTTAATATT CACTGTTTCT GTTGTTGGAG AAAAGGAAAG 000720 000721 CAGAGTTGCT CTTTCTCATT ACTCTCCCCA ACGCACATCT GTTTCCTCTC GTATCTTGGA ATTAGGAAGA TGGAGGAGAC 000800 000801 TTAAGTGGTG ACCCACCTAG CCTCCTGATG CATGCTGGGC TCACTTTAAA ACTCCCAAAA CAGATGGCAG TTGATCACGG 000880 000881 TTTTAAAGAT CCCAGCATAG ACTTTCTGCA GCCTCCCTTG TTAGCCACTA TCAGCGCTTA ACATTCTGTC ATCTGAATAA 000960 000961 CTCCTTAAAA ATGATAGCAA TGGTAGTAGA AATTTAAAAG GAACCTCCCA AAAAACATGC AAAAGCTTAC CACCCCAGTA 001040 001041 AATCACCCGC AACAATGTCG CAACAGTTTA AATTTACTGC AGAGAGAGCT GAAGTTTAGG AGACACAGCT TTATAATATT 001120 001121 TTTGAGAGAT AGTTGAGTGC AAATGAGTCC TGTTCCTCTT GCATCAGGGC CTGCTCCACT GAGTCATCCT GCCTTCAGAA 001200 001201 GCTTCCAGCT AAGTGGCAGG CCCCGGCCAT AGGCTCCCTG TGTCCCCAGC CTCCAGAGAA CACACAATGT TCTCATCGCC 001280 001281 CTTAGCTCCA TTCCAGAAGG GGCCTGCAGT TCTGCAGCTT ATCAGGGGTC TACTGGGAAG TGAGATGTCA CTGTCCCTTT 001360 001361 CTGGCCCTGC ATTGTCTGTG AGTGGCTCTC CTGGATTAAG AGTTGGCAAA GTATGGCCAG TGGCCAGGAC TGGCCTGCTG 001440 001441 CCTGTTTTTG TTTAACCCGT GAGCTAAGAA TAGTTTTTAC CTATTTTAAG TAGTTGAAAA AAAAATCAAG AGAAGAATAC 001520 001521 TATTTCGTGA TATGTGAAAA ATCACATGAA ATTCAAATGT AAGTGTCCAT AAATAAAGTC TTACTGG |
Predicted Small Protein
Name | NONHSAT032777_smProtein_1016:1135 |
Length | 40 |
Molecular weight | 4766.5152 |
Aromaticity | 0.0769230769231 |
Instability index | 56.6256410256 |
Isoelectric point | 11.4371948242 |
Runs | 5 |
Runs residual | 0.0405354449472 |
Runs probability | 0.0491962550786 |
Amino acid sequence | MQKLTTPVNHPQQCRNSLNLLQRELKFRRHSFIIFLRDS |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHHHHHHHLLLEEEEEEELL |
PRMN | - |
PiMo | - |