NONHSAT033416
Revision as of 21:22, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033416 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1168 nt |
Genomic location |
chr13-:42207141..42208291 |
Exon number |
1 |
Exons |
42207141..42208291 |
Genome context |
|
Sequence |
000001 GTTCTCTCCT CTCCCCTCTG TATGATTCTC AGCATTGCCT GCTGACCAAG CCACGGCACC CATGGCCAAA CATACACAAC 000080
000081 TTCATGTCTC AAAGTTTGTG CTGCCTAAAG CCCTCAACCT CCCAAGACAG GCACTGCTAA GGGAATTCTC AGATGGGGCA 000160 000161 CAAAGGGAGA TAAGTGGGAG GGGTATAGGG AGAAAGAGGG AGCCACAGGA AGCAGAGGCA GGGGAACTTG TTGGAATGGC 000240 000241 ATCCAGGACT CTAGTCTTTT TAGGAGTAAG AATTTCAAGG TATAAGTGGG AAACAAACAG ATTTACATGG TTAAAGAAAA 000320 000321 TGGAGAACTA ACACAAAGGA GGAAATGACC AACCCACCTA TGTTCGATTG TAGAAACCCC TGATTAATTA CAGTCATTAT 000400 000401 GTGAATTGTT TGTGTGTTTC TGATTACCAT GCAGCTCAAT ATCAGTGATA TATAATGTAA ATATATATCA GATCAGCTGT 000480 000481 GCCCTAAATT TAATTAGAAA GCTTTACCAA CCGATATTTA GTATTCTTAA TTTGTCGCTC ACATCGTAAG AGCCTTCACA 000560 000561 ACCTAAAATT AAAAGAATGT TTCAAAAAGT GAATTCCAAT GGTATTCTTT TCTCCTACCC CAAAGTTCCT GCTTTCTTTC 000640 000641 TAACTTGCCC CCATAAGTTC CAGGAGAGCA GTTATCAGGC TTCCCTATGT TATTGGTGGC TTATATACCA CTGCGGTCAT 000720 000721 TCTGTGGCTT TGACACAGCC GCAGTGGCAA TGGCCATGCA GTCATTCATT TAGTCACTAG ATATTTCCTG AGCTTCTGTG 000800 000801 ATGTACCAAG ACTGTGCCTG GTGCTGAAGA TGTTAGGAAG AATAAGATTC AGTCCCTTCC CTCCAGATGT TTACACCTAG 000880 000881 AATCCATACC AGCTTATATA TCTAGCCACA TCTTCCTACA TACCCCATAC CACTGATTCA TTGCAATGCT ATTTATCCCT 000960 000961 GAAATATTTC TTCAAAAAAT GTATATGTGT GGATGTATAT ATACATATGC ACATACATAA ATGTACTATC ATAAAAGAGT 001040 001041 ACATTACGAT TACTTCATGT GTCAAGTTTT CCCATGCTCC AAGTGCTGTT TCATACTCTG TATTGGAGCC AGCGCAGCAA 001120 001121 CCTGGAAGGT TCCCTCACAC AGAGCCTCAG TAAACCCATG GAACACAC |
Predicted Small Protein
Name | NONHSAT033416_smProtein_686:772 |
Length | 29 |
Molecular weight | 3067.7076 |
Aromaticity | 0.142857142857 |
Instability index | 47.6321428571 |
Isoelectric point | 5.58514404297 |
Runs | 5 |
Runs residual | 0.0246478873239 |
Runs probability | 0.0509803921569 |
Amino acid sequence | MLLVAYIPLRSFCGFDTAAVAMAMQSFI |
Secondary structure | LEEEEELLLLLLLLHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLHHHHHHHHHHHHHHHHHH |
PiMo | i??????????????????????????? |