NONHSAT034318

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT034318

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2461 nt

Genomic location

chr13+:74739055..74741578

Exon number

2

Exons

74739055..74739578,74739642..74741578

Genome context

Sequence
000001 gtggagagta ggggtggtta atgtgtacag aaatatagtt agatagaatg aataaaatct agtatttgat agcacaacag 000080
000081 ggtgactaca gtcaacaata atttactgta catttgaaaa taactgagga taactagaat gtttgtaaca caaagaaatg 000160
000161 ataaatgcct gaggtgatgg ataccccatt taccctgatg tgattcctac acattgtatg catgtatcaa aatatctcat 000240
000241 gtaccccata aatatataca ccttcagtgt acccataaaa attaaaaaTT AAAAAGTTTT AAAAAATGGA Atcatcaagg 000320
000321 aacctgactc ttttcatcct tcaactttgt catcctcagt gggcttttca tattttcttt tctttttttt tttttttttt 000400
000401 tgagatggag tcttgctctg tcaccaaggc tagagtgcag tagcgcaatc ttgactcact gcagcctcac ctcctagttc 000480
000481 aagtgatcct cccacctcag cctcccaagt agctgggatt acaggccagg ctggtcttaa actcccaccc tcaactgatc 000560
000561 tactcacctc agcctcccag agtgctggaa ttacaggagt gagccaccac ttccgggctc atattttcat agttgcactt 000640
000641 gttccgtggt tgcaagataa ctgccacatc accaggttta aatcttcaca tcaacatcac agacaggagg ggataaacta 000720
000721 ctactgtatt cttttggagg aggaagggaa atgccaggtt tccctgatgt ctcattagct acaactcctt cacatgccac 000800
000801 ctctggacca accattcaca gaagagaatg agattattat gaatggccta gaccaatcat atctcattcc ttggggctat 000880
000881 gttaggatcc cacattgcct gaggttagag gacctctgcc cattgcaaaa tctagtttct gtttgcaggg aggaaagata 000960
000961 taatgactac tgaatggtca actcacagAA AGACTTGTTA CATCTATGAG ATCTATTATG TATAAAATCT GGAGAAAGTG 001040
001041 TTTAATTGCT GGTTGTTAGT TCAGGATGGA TCGATTGCAC AGGATTTTGA ACTAATGCAT AAACACCttt tttttttttt 001120
001121 tttttttttg agatagggcc tcactcccat ggcccaaggt ggagagcagt ggcgcgatcc cagcttactg cagccttgac 001200
001201 ttcccaggct caggtgatcc tgccacctca gcccccgagt agctgggact gcaaatgctt gccacaatgc tcagctaatt 001280
001281 tttgcatttt ttgcacagac agggttttgc catgttgcct agggaggtct caaactcctg ggctcaaggt gatttgctgc 001360
001361 cttggcattc caaagtgctg ggattatagg cacgatccac tgtgcctggc cAAGACCTGC TTTTTAAGAC CTAAAAGACA 001440
001441 CCCTAAAAGA TAACAAATGG AATGCTCTAT CTAAGGATGA TTCAGAGACT GAAAGCTTCC AGTAAAATCA TGTGTAAGAC 001520
001521 TGCAACTAAC AAATGATTGC CAGAAGTAGA TACTGAAGAG TGGAATGATT ACTCCTACTT AAGTAGCTCA CTCCCATTAG 001600
001601 AAAACCGACA TATAAGTTCT CCCGATGTCA TTTTTTATAT TTTCCCCTAT CTACATGTAT TTTTATTACT TATTTTCTCT 001680
001681 TTAATCCTAT TTCTGCATGG ATTTCCCCCC TACTTTTCTT TGTCTACTAG ACTATGACTC AACCTCTACT TGTTCTAATA 001760
001761 TTAAATACAC AGCGCCACAC ATTTGATGCT TACAGTAGTT CATTGGTATT CTTCTGCACC TTCTTTAACC TCTTTCAAAT 001840
001841 ATATGCTCAA ATAATTAGCT CTTCTCCCAC TGAAGCTGAG TTATCTCACT GATTTATATC ACCCAGGCTT CTATCATCTT 001920
001921 CCTTCACCCA AGACGCACAC TTTGGTTTTC TCTGTTCTCT CGCTGTCTTC AGAAATATTT GTGACTGATA TTGTGCCTTT 002000
002001 GTAATCATGC AGAAGCAAGT GTAGACAAAC AAAACCATAT TTTCTTCCTA CACAAAACTA GTGCTATGTA TTGATCCTTC 002080
002081 TCTCTGCTCA CCTTGAACTC TTTCATTCTA ATAAATTCTA GTCTCTACTT TTACATTCAC ACACTTTGAC TCTGTATCTT 002160
002161 GTTTATTTTC ATTTTATTCT TTGCCTCTTT ATCTGTCCAG CTAAGGCATA TAGAGATGCT CAAGCAAAGA ATGCATTAAA 002240
002241 GCATAATTTA ACTAGCTTCC ATGTGTCTAG CAGGTTCTAT GGGGAGAGGA AAGCGTTGGA ACATCTGGTA TAACTCACTT 002320
002321 TTTTGCTTCT AGAGGTCAAA GGGGATAGGA CAGAAGAATA GCTGTTTAGT ATTAGGTGTA AGGGAACCAA TATAAGGTCA 002400
002401 AGTGGAAATA GCTCCTTTTC CTAGACGCTG TTTCTAACTG GATTTAGGGA GAAAATAAAA T
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Predicted Small Protein

Name NONHSAT034318_smProtein_1733:1891
Length 53
Molecular weight 5971.7654
Aromaticity 0.153846153846
Instability index 59.2942307692
Isoelectric point 5.26531982422
Runs 7
Runs residual 0.0157540199913
Runs probability 0.0438716026951
Amino acid sequence MTQPLLVLILNTQRHTFDAYSSSLVFFCTFFNLFQIYAQIISSSPTEAELSH
Secondary structure LLLHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLEELL
PRMN LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooo