NONHSAT034318
Revision as of 21:26, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034318 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2461 nt |
Genomic location |
chr13+:74739055..74741578 |
Exon number |
2 |
Exons |
74739055..74739578,74739642..74741578 |
Genome context |
|
Sequence |
000001 gtggagagta ggggtggtta atgtgtacag aaatatagtt agatagaatg aataaaatct agtatttgat agcacaacag 000080
000081 ggtgactaca gtcaacaata atttactgta catttgaaaa taactgagga taactagaat gtttgtaaca caaagaaatg 000160 000161 ataaatgcct gaggtgatgg ataccccatt taccctgatg tgattcctac acattgtatg catgtatcaa aatatctcat 000240 000241 gtaccccata aatatataca ccttcagtgt acccataaaa attaaaaaTT AAAAAGTTTT AAAAAATGGA Atcatcaagg 000320 000321 aacctgactc ttttcatcct tcaactttgt catcctcagt gggcttttca tattttcttt tctttttttt tttttttttt 000400 000401 tgagatggag tcttgctctg tcaccaaggc tagagtgcag tagcgcaatc ttgactcact gcagcctcac ctcctagttc 000480 000481 aagtgatcct cccacctcag cctcccaagt agctgggatt acaggccagg ctggtcttaa actcccaccc tcaactgatc 000560 000561 tactcacctc agcctcccag agtgctggaa ttacaggagt gagccaccac ttccgggctc atattttcat agttgcactt 000640 000641 gttccgtggt tgcaagataa ctgccacatc accaggttta aatcttcaca tcaacatcac agacaggagg ggataaacta 000720 000721 ctactgtatt cttttggagg aggaagggaa atgccaggtt tccctgatgt ctcattagct acaactcctt cacatgccac 000800 000801 ctctggacca accattcaca gaagagaatg agattattat gaatggccta gaccaatcat atctcattcc ttggggctat 000880 000881 gttaggatcc cacattgcct gaggttagag gacctctgcc cattgcaaaa tctagtttct gtttgcaggg aggaaagata 000960 000961 taatgactac tgaatggtca actcacagAA AGACTTGTTA CATCTATGAG ATCTATTATG TATAAAATCT GGAGAAAGTG 001040 001041 TTTAATTGCT GGTTGTTAGT TCAGGATGGA TCGATTGCAC AGGATTTTGA ACTAATGCAT AAACACCttt tttttttttt 001120 001121 tttttttttg agatagggcc tcactcccat ggcccaaggt ggagagcagt ggcgcgatcc cagcttactg cagccttgac 001200 001201 ttcccaggct caggtgatcc tgccacctca gcccccgagt agctgggact gcaaatgctt gccacaatgc tcagctaatt 001280 001281 tttgcatttt ttgcacagac agggttttgc catgttgcct agggaggtct caaactcctg ggctcaaggt gatttgctgc 001360 001361 cttggcattc caaagtgctg ggattatagg cacgatccac tgtgcctggc cAAGACCTGC TTTTTAAGAC CTAAAAGACA 001440 001441 CCCTAAAAGA TAACAAATGG AATGCTCTAT CTAAGGATGA TTCAGAGACT GAAAGCTTCC AGTAAAATCA TGTGTAAGAC 001520 001521 TGCAACTAAC AAATGATTGC CAGAAGTAGA TACTGAAGAG TGGAATGATT ACTCCTACTT AAGTAGCTCA CTCCCATTAG 001600 001601 AAAACCGACA TATAAGTTCT CCCGATGTCA TTTTTTATAT TTTCCCCTAT CTACATGTAT TTTTATTACT TATTTTCTCT 001680 001681 TTAATCCTAT TTCTGCATGG ATTTCCCCCC TACTTTTCTT TGTCTACTAG ACTATGACTC AACCTCTACT TGTTCTAATA 001760 001761 TTAAATACAC AGCGCCACAC ATTTGATGCT TACAGTAGTT CATTGGTATT CTTCTGCACC TTCTTTAACC TCTTTCAAAT 001840 001841 ATATGCTCAA ATAATTAGCT CTTCTCCCAC TGAAGCTGAG TTATCTCACT GATTTATATC ACCCAGGCTT CTATCATCTT 001920 001921 CCTTCACCCA AGACGCACAC TTTGGTTTTC TCTGTTCTCT CGCTGTCTTC AGAAATATTT GTGACTGATA TTGTGCCTTT 002000 002001 GTAATCATGC AGAAGCAAGT GTAGACAAAC AAAACCATAT TTTCTTCCTA CACAAAACTA GTGCTATGTA TTGATCCTTC 002080 002081 TCTCTGCTCA CCTTGAACTC TTTCATTCTA ATAAATTCTA GTCTCTACTT TTACATTCAC ACACTTTGAC TCTGTATCTT 002160 002161 GTTTATTTTC ATTTTATTCT TTGCCTCTTT ATCTGTCCAG CTAAGGCATA TAGAGATGCT CAAGCAAAGA ATGCATTAAA 002240 002241 GCATAATTTA ACTAGCTTCC ATGTGTCTAG CAGGTTCTAT GGGGAGAGGA AAGCGTTGGA ACATCTGGTA TAACTCACTT 002320 002321 TTTTGCTTCT AGAGGTCAAA GGGGATAGGA CAGAAGAATA GCTGTTTAGT ATTAGGTGTA AGGGAACCAA TATAAGGTCA 002400 002401 AGTGGAAATA GCTCCTTTTC CTAGACGCTG TTTCTAACTG GATTTAGGGA GAAAATAAAA T |
Predicted Small Protein
Name | NONHSAT034318_smProtein_1733:1891 |
Length | 53 |
Molecular weight | 5971.7654 |
Aromaticity | 0.153846153846 |
Instability index | 59.2942307692 |
Isoelectric point | 5.26531982422 |
Runs | 7 |
Runs residual | 0.0157540199913 |
Runs probability | 0.0438716026951 |
Amino acid sequence | MTQPLLVLILNTQRHTFDAYSSSLVFFCTFFNLFQIYAQIISSSPTEAELSH |
Secondary structure | LLLHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooo |