NONHSAT034472
Revision as of 21:27, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034472 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2131 nt |
Genomic location |
chr13-:79886132..79888263 |
Exon number |
2 |
Exons |
79886132..79887492,79887498..79888263 |
Genome context |
|
Sequence |
000001 AATTACTTAT AAAGAATCTG ATTAAATCTC ATCCTAAATA TGTAGCCACA ATATCTTTTT TATAATGGGA CTATAAGAAA 000080
000081 TGTTTGCACT TAGTTTCTGA GTATTCCTTC ATAGATTCTC AGGAGGCATT TAAAAAGTTG GAAGCTATAC TTGGTAGTAA 000160 000161 CTATATTAGA AAAGTCCAAT TGACACTGAT TTTTATTCAC CCTTGTTTTA TTTTTATCCA GCCATACTAC CTTTATCACT 000240 000241 TTTTTTTTTT TTTTGGTGCA AAGCTTAACA TTCTGCAAAC TTTTTTTCCC CTTGAGTATG CATTGCATTT GTCATGAAGA 000320 000321 GTAAAAAGAA TGTAATAAAC ACATCAGTCA TAATGTAAAT TAACTGTTTT GATCCACATT GGTTGGATAC AGCATGGTTA 000400 000401 ATTCTAGGCT TGGTTAAAAA TACATAATTT GGAAAGTCTT CTAATATTTT AAAGACCTAG TAGTTTACAA GGCCTTTTTT 000480 000481 TGTTGTTGTT GTTAGACTTT TGGTTCACAT TTACAAACTA GCCACAGGGT GTTCATAAAT ATTTCCCCAA ATTAGTTGAG 000560 000561 TATTTTTAAT TGTAAACAAA GAATTTTCTG CCCCTACTAC ACTGGTTTAC TGCTAGGGTA AAGACCATTG TCTGAAGACA 000640 000641 CTAAACTTGG TGTTAACAGT GTTGATTGTT TAATGGATAT GGACTACATG CCACTACCTG CAACTTTGTC ATCCTGGAGT 000720 000721 TTTTATTTGG TTTGGTTTGA TTTTTCGTTT TTTGCTTTTA AAATTCAAAG CAAAACAAAA TTGAAGATAC CATTGAGAAT 000800 000801 CAGAATTCAA GATGACTTGA TTCTCACTAA GATCACTGCG CTTTTTAAAA ATTGCTTTGA GATCTAGTCA GTTACATATT 000880 000881 TAAAATCCCC GTGTTGATTA GAGATAAGGT TTTCATTATT TTATTTTCCT AAATAGGATT CTCATGGAGC TATTGTAGAT 000960 000961 AACTGTACAG AATCACTTTT GTGTAATTGA ATGAAGCAGT TTCCTCTGCA TGATTGCATA GTGAAAGCCT TTTATATATC 001040 001041 TATATTTTTC AATACTTAGA TTTTACACTA TTAAGCTGCT CTAGTCATGC TATATTTGTT TTTTTAATAG AGTTTATAAA 001120 001121 TATTTATGCT CAAAATACAG ATCAACTGAA TATTTTTGGT CTTGTTTACA AGATAAATCA TACTTTAAAA TGATACAGGC 001200 001201 CCCTCAAGTG TCTTAGGAAA AAGTCATTGG TGCTATAAAA CCTTTCAGTA TCATTTTTGA ACCCATTGTT CAGACTTTGC 001280 001281 TAGGTTTTAA TCTGATTCCT TGTGATTTAT TATAATGTAG CAGCATACTT ATAAAAGTGG TCTGTGCTGA GTCAGAGAGC 001360 001361 CCAGCCCATT AGAAACACAT CATAATTTAA GAATATGATG CAGAATGCCC TTACACTTAT TTGTGCCCAG CTTCCCAAAA 001440 001441 AGAAAATTGT TTTGTTAAGA GGAAGGCAGT TAATTTGGCT AGAATCCAAA AACTCATTCA GCATGGCTGT TTTCCCTTAT 001520 001521 TTCAAATGAA AACTTTTCTA ATACTAAAAT ATGTAATCCT GCTTTGCTTT AAATTTCCAT GTCTGTCACT CAACAGGAGG 001600 001601 CATAGTGATT CTTAAATATT TACGGAACAT TTGGTGAGTT GTAAAGAGAA GTATTATTGC ATTGTAGGTT TTTGCATTGA 001680 001681 TGTGTCAATT TTTTTGTTTT GTCCCAAGAT TTCCTTCCAG CACCTTAATG AATGTTCATA TGATAGAATG TTTTAAGTAT 001760 001761 CAGCAAAGCA TTCATGGATG CCTGCTTTTC ATTCTCAGAA GGCTAAACCT GTTTTGGGTA TGATGCTACT TCAGAACATA 001840 001841 TTGTCTGGCA CAAGATTTCT TCTAATAAGT GGTTTATTTA AACTCAATTT CGGTGGACTG TTGAATTGAA AAACACCAAA 001920 001921 GGAGTCTTCT TGTCTGGAGA CTGGATTGTT CCAGCTTTAA ATACCTGTGC CCATAAGTAT CCCATTTCAT GAATGTGTGT 002000 002001 TGGCATGGGG AAAAAATTTC CCTGCTCTTT GAGTGGAGCG AAAGCAATTG GTTAAGCTGT AGCAGCTTTT TTGTTTATTT 002080 002081 TTTTAAAGTA ATAATAAAAC TTGAACTGAA AAAAGAAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | NONHSAT034472_smProtein_1679:1822 |
Length | 48 |
Molecular weight | 5745.9183 |
Aromaticity | 0.191489361702 |
Instability index | 73.4063829787 |
Isoelectric point | 8.93572998047 |
Runs | 7 |
Runs residual | 0.0173404255319 |
Runs probability | 0.0438716026952 |
Amino acid sequence | MCQFFCFVPRFPSSTLMNVHMIECFKYQQSIHGCLLFILRRLNLFWV |
Secondary structure | LLEEEEELLLLLLLHHHLHHHHHHHHHHHHHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |