NONHSAT034552

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT034552

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1800 nt

Genomic location

chr13+:85095860..85098050

Exon number

2

Exons

85095860..85096300,85096692..85098050

Genome context

Sequence
000001 AATAAATATA TTTTCTTTCT TTACACTGAC TCACTAGTCC TACTAACTTT TCCAATTATT ATTACCTCAA CTAGCATTTA 000080
000081 TAAAGACAGT TTGTACCCCA ATGATGTAAA ATCATCCATT GCATTTACCT TTATTAGCAG CCTCATCCCC ACCACCAGAT 000160
000161 TCATCTATAC AGGCCAATAA ACTATTGTTT CAAACTGACA CTGAATGACA GTTCAAACCC TAAAGCTTTC ACTCAGCTTT 000240
000241 AAACTAGATT ACTTCTTTAC AATATTCATT CCAGTAGCAC TATTTGTCAC ATGATGTATT ATAGAATTCT CAATATTGTA 000320
000321 TATATATACT CAGGCCCCAA CATAAATCAA TTCTTCAAAT ATCTACTCAT TTTTCTCATT ACTATACTAA TTCTAGTCAC 000400
000401 TGCCAACAAC CTATTCCAAC TCTTTATCGA ATGGAAAGGC GTCCTTCCTG CTAATTGGCT GATGGTATGG CGGAACAGAC 000480
000481 ACCAACACAG CAACCCTTCA AGCAATCTGA CATGATTGCC TCAGAGACAT CAGCTTTATC CTAGCAATAG CACAATTTCT 000560
000561 CTTGTCCAGT ATATTAGAAC TTCAGCAAAT ATTTATCCTC AACCCTAGCC CCAGTACTCT CCCACTAATT GGTTTTCTAG 000640
000641 TAGCAGCAGC TAGCAGATCA GCTCAATTTG GTCTCCACCC CTAACTCCTG TCAGCTATAG AAGCCCCAGC ACCCATCTCA 000720
000721 GCCCTACTCC ACTCTAGCAC AATAGTGGTA GCAGGCGTTT TCCTACCAAT ACAATTTTAT TCCCTAATAG ATAATAACAT 000800
000801 AAATATTCAA ACACTCACAT TATGCTTAGG AGCTATTACT ACACTATTTA CAGCAATCTG CACTCTAACA CAAAATGACA 000880
000881 TATAAAAAAT TGTGGCATTT TTCACCTCGA GTTAACTAGG ACTCATAATA GTTACAATTG GTATTAACCA ACCTTACCTA 000960
000961 GCTTTTCTTC ATATTTGTAC ACATGCCTTT TTCAAAGCTA CATTATTTAT ATGCTCCAGG TCTATTATTC ATAACCTCAA 001040
001041 TGATGAGCAA GCTATTCAAA ACATAGGTAG GCTATTTAAA GCTTGCCCTT TACCTCTTCC TCACATACTA TTGGCAGCCT 001120
001121 CGCACTCAGG TATATACCTT TCCTCAAAGG CTTCTGCTCC AAAGATCTTA TTATTGAAGC CACAAACACA TCATATACCA 001200
001201 ATGCCCGAGC CCTCTTAATC ACACTCATTG CCACCTCCCT AACAGCTGTC TGCAGTACCC AAATTATCTT CTTCGCACTG 001280
001281 GTAGGACAAC TTCGCTTCAC AACCTTAGTT GTTATCAACA AAAATAATGC CTCCTAATTA ATTCAATTAA ACATTGAAAA 001360
001361 ATTGGTAGCA TTTTTGCCAG ATTTTTAATC TCCAACAATA TCTCCCCAAT ATCAATTCCC CAAATAATTA TGCCTCTCCA 001440
001441 TATAAAGCTC ACAGTTCTGG GCACAACTAT CCTAGGCTTC TCACTAGCAC TATAACTCAA CCTTATCACT AATAACCTCA 001520
001521 AACTTAAATA CCCATCACAA ATATTTAAAT TTTCCAATGT ATTAGGATTT TATTCAACCT CAATGCGCCA TGCAACACCA 001600
001601 TATTCAAACT TCCTTGCAAG CCAAAATATA GCCTCCCTTC TACTAAATCT AATCTGAATA GAAAGGACAA CACCAAAAAC 001680
001681 ACTGCCCAAC TTCAGATCAT AGCCTCAACC ACTGTACCTG CCCAGAAAGG CCTAATTATG CTCCACTTTT TCTCTTTCCT 001760
001761 TATTCCATTT CTCCTAACCT TATTCTTAAT CATTTAACCC
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Predicted Small Protein

Name NONHSAT034552_smProtein_290:514
Length 75
Molecular weight 8920.4742
Aromaticity 0.175675675676
Instability index 41.677027027
Isoelectric point 9.86993408203
Runs 7
Runs residual 0.0480553724456
Runs probability 0.0461175461176
Amino acid sequence MMYYRILNIVYIYSGPNINQFFKYLLIFLITILILVTANNLFQLFIEWKGVLPANWLMVW
RNRHQHSNPSSNLT
Secondary structure LLEEEEEEEEEEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHH
HHHHLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii
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