NONHSAT034552
Revision as of 21:27, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034552 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1800 nt |
Genomic location |
chr13+:85095860..85098050 |
Exon number |
2 |
Exons |
85095860..85096300,85096692..85098050 |
Genome context |
|
Sequence |
000001 AATAAATATA TTTTCTTTCT TTACACTGAC TCACTAGTCC TACTAACTTT TCCAATTATT ATTACCTCAA CTAGCATTTA 000080
000081 TAAAGACAGT TTGTACCCCA ATGATGTAAA ATCATCCATT GCATTTACCT TTATTAGCAG CCTCATCCCC ACCACCAGAT 000160 000161 TCATCTATAC AGGCCAATAA ACTATTGTTT CAAACTGACA CTGAATGACA GTTCAAACCC TAAAGCTTTC ACTCAGCTTT 000240 000241 AAACTAGATT ACTTCTTTAC AATATTCATT CCAGTAGCAC TATTTGTCAC ATGATGTATT ATAGAATTCT CAATATTGTA 000320 000321 TATATATACT CAGGCCCCAA CATAAATCAA TTCTTCAAAT ATCTACTCAT TTTTCTCATT ACTATACTAA TTCTAGTCAC 000400 000401 TGCCAACAAC CTATTCCAAC TCTTTATCGA ATGGAAAGGC GTCCTTCCTG CTAATTGGCT GATGGTATGG CGGAACAGAC 000480 000481 ACCAACACAG CAACCCTTCA AGCAATCTGA CATGATTGCC TCAGAGACAT CAGCTTTATC CTAGCAATAG CACAATTTCT 000560 000561 CTTGTCCAGT ATATTAGAAC TTCAGCAAAT ATTTATCCTC AACCCTAGCC CCAGTACTCT CCCACTAATT GGTTTTCTAG 000640 000641 TAGCAGCAGC TAGCAGATCA GCTCAATTTG GTCTCCACCC CTAACTCCTG TCAGCTATAG AAGCCCCAGC ACCCATCTCA 000720 000721 GCCCTACTCC ACTCTAGCAC AATAGTGGTA GCAGGCGTTT TCCTACCAAT ACAATTTTAT TCCCTAATAG ATAATAACAT 000800 000801 AAATATTCAA ACACTCACAT TATGCTTAGG AGCTATTACT ACACTATTTA CAGCAATCTG CACTCTAACA CAAAATGACA 000880 000881 TATAAAAAAT TGTGGCATTT TTCACCTCGA GTTAACTAGG ACTCATAATA GTTACAATTG GTATTAACCA ACCTTACCTA 000960 000961 GCTTTTCTTC ATATTTGTAC ACATGCCTTT TTCAAAGCTA CATTATTTAT ATGCTCCAGG TCTATTATTC ATAACCTCAA 001040 001041 TGATGAGCAA GCTATTCAAA ACATAGGTAG GCTATTTAAA GCTTGCCCTT TACCTCTTCC TCACATACTA TTGGCAGCCT 001120 001121 CGCACTCAGG TATATACCTT TCCTCAAAGG CTTCTGCTCC AAAGATCTTA TTATTGAAGC CACAAACACA TCATATACCA 001200 001201 ATGCCCGAGC CCTCTTAATC ACACTCATTG CCACCTCCCT AACAGCTGTC TGCAGTACCC AAATTATCTT CTTCGCACTG 001280 001281 GTAGGACAAC TTCGCTTCAC AACCTTAGTT GTTATCAACA AAAATAATGC CTCCTAATTA ATTCAATTAA ACATTGAAAA 001360 001361 ATTGGTAGCA TTTTTGCCAG ATTTTTAATC TCCAACAATA TCTCCCCAAT ATCAATTCCC CAAATAATTA TGCCTCTCCA 001440 001441 TATAAAGCTC ACAGTTCTGG GCACAACTAT CCTAGGCTTC TCACTAGCAC TATAACTCAA CCTTATCACT AATAACCTCA 001520 001521 AACTTAAATA CCCATCACAA ATATTTAAAT TTTCCAATGT ATTAGGATTT TATTCAACCT CAATGCGCCA TGCAACACCA 001600 001601 TATTCAAACT TCCTTGCAAG CCAAAATATA GCCTCCCTTC TACTAAATCT AATCTGAATA GAAAGGACAA CACCAAAAAC 001680 001681 ACTGCCCAAC TTCAGATCAT AGCCTCAACC ACTGTACCTG CCCAGAAAGG CCTAATTATG CTCCACTTTT TCTCTTTCCT 001760 001761 TATTCCATTT CTCCTAACCT TATTCTTAAT CATTTAACCC |
Predicted Small Protein
Name | NONHSAT034552_smProtein_290:514 |
Length | 75 |
Molecular weight | 8920.4742 |
Aromaticity | 0.175675675676 |
Instability index | 41.677027027 |
Isoelectric point | 9.86993408203 |
Runs | 7 |
Runs residual | 0.0480553724456 |
Runs probability | 0.0461175461176 |
Amino acid sequence | MMYYRILNIVYIYSGPNINQFFKYLLIFLITILILVTANNLFQLFIEWKGVLPANWLMVW RNRHQHSNPSSNLT |
Secondary structure | LLEEEEEEEEEEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHH HHHHLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii iiiiiiiiiiiiii |