NONHSAT034806
Revision as of 21:28, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034806 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1239 nt |
Genomic location |
chr13+:97600272..97601835 |
Exon number |
2 |
Exons |
97600272..97600375,97600719..97601835 |
Genome context |
|
Sequence |
000001 GGTTGGATCA GTGGAGATAA GGCAGTTGGA TGATTTGCTC TTTTCCCGCT TTCTAGCTGT AAGAAGAAAT GTCTTCTGAT 000080
000081 TTTCTTCTTT TTCCAAGTAT ATACATCTCC TCATCAAAGT TCAGACTATC TGAGATACTA TTGTTTTTGG AAAATCTTCT 000160 000161 GAAGATCTGG CTTGGAAGCA GTATCCAAGG TGTTTTCCCC ATCAACACTC TCTTCAGCAT TTTCTCCCAG AACAGGGGAG 000240 000241 CTGACTGAAA GAACATGAAC TTTGGTTTCC AAATCTTGAG CATCTGGCTT CATGACTGCA GCCGGACCAT CAATGCCATG 000320 000321 AAGACGACAT TGCTGTGGGG GGTATGAGAG TCCATCAAAG GAGTCTGCTC CTCATTGGCC TTTGGCTTCA CCCAACTTAG 000400 000401 CCTGACTTCT GGATTTGGCT GCACCATGAA TGGCTGAAGG TGCTTTTTTC TCTGCTTCTT CTTAAGCAGT GCTCTCTGAT 000480 000481 TATCCAGTGC CAGCTGTTAA AGTTTCATCG TCTCATCGTG AAAGACACTG TCCCCACTGG AACCAAGCCG GCAGCAACTG 000560 000561 GCATTCATGC CTGCTGCTGT TTAAGTGGCA GCCATGTCCC CACTCCTAGC CACCCATGGC TCTAAACTAC TTTTAAGAGC 000640 000641 TTGTTGGCCA GGCGTGGTGG CTCACACCTG TAATCCCAGC GCTTAGGGAG GCCAAGGCGG ATAGATCAGG AGGTCAGGAG 000720 000721 ATCGAGACCA TCCTGGCCAA CATGGTGAAA ACCCATACCT ACTAAAAATA CAAAAATTAG CTGGATGTGG TAGTGTGCGC 000800 000801 CTGTAGTCAC AATTACTCAG GAAGCTGAGG CAGGAGAATC ACTTGAACCT GGGAGGTGGA GGTTACAGTG AGCTGAGATC 000880 000881 GTACCATTGC ACTTCAGCCT AGCGACAGAG TGAGACTCCG TCTTAAAAAA CAAAAGAGCT TGTTTGGAGA GTGTATCATG 000960 000961 GGGGTGCAGC TACTCCTATA CCTTTGCTCA AAGACTGGTC CTCTTCTCTG GGGGACGACC TCTTCCACGG AGCGTGCACT 001040 001041 TAGGGAGGGA CAGGAGGGAT GCACATAGAG CGGTGAGCGA AGAAGAGCAC ACACGCCTAG CCAGCCAGGT CAGCCGAATC 001120 001121 AACCCTGGCG ATCAATAGGG TAACAGACGT CTCAGCCAGA TCACCCTCAT ATCCTAAAGC ACTCTTAATT AATTTTTTAC 001200 001201 AAATAATAAA ATGCTTTCAT CCCCAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT034806_smProtein_68:247 |
Length | 60 |
Molecular weight | 6702.7226 |
Aromaticity | 0.152542372881 |
Instability index | 45.3661016949 |
Isoelectric point | 6.04595947266 |
Runs | 11 |
Runs residual | 0.0419841393251 |
Runs probability | 0.0361885950122 |
Amino acid sequence | MSSDFLLFPSIYISSSKFRLSEILLFLENLLKIWLGSSIQGVFPINTLFSIFSQNRGAD |
Secondary structure | LLLLEEELLEEEEELLLLHHHHHHHHHHHHHHHHHLLLLLLEEELLHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |