NONHSAT035100
Revision as of 21:29, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT035100 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6688 nt |
Genomic location |
chr13-:109882819..109960133 |
Exon number |
11 |
Exons |
109882819..109882931,109884735..109884789,109886202..109886680,109907444..109907712,109910707..109911015,109917255..109917514,109917732..109918905,109921134..109921382,109923414..109926390,109928997..109929474,109959805..109960133 |
Genome context |
|
Sequence |
000001 GCACATTTGA ACTTGGCTTC CCCAACTTTT TCTTGCCCTT TTCTCTTTTT GATAAATAAC CATCTTGCTG TACATCAAAT 000080
000081 TCTTGAAGCG TTCCTGCTTT CCAAGCTTGT TCGTTTCACT TTCCTTGTAG ATTCTATTTC TCCATCTCCT GCACATCCAT 000160 000161 TAACGTCTCT GGGCTCTGGA ATCTAGCCTC TGTTCATCCA CGTTGCTCCT CAGGAAAGAA AAACAGTATT AGTTTAACAC 000240 000241 TCCAGAGTAT CTAGAACTAA GTTATGCTTT GAGGAGGTCT GAGCAGTTGA TGAGCAGTTC AGGCTGTGAA GGAGCTTGCA 000320 000321 GGTGTTCCCC ACAAGAAGAA AGCACATACA TGTATTCAAT GTAAGTTTTA TGTAACATGG GAGCCTTCAG AAATGAAGAC 000400 000401 CCAAGGAAAC AGGGAAATCT ATGGATGTTT AGGTTTGATG AAGACTTGGA CAGTCATGCA GAAATATGAT TGGACAAGTG 000480 000481 GGTGTGACCT AATGGTTATA AAATGAGGGG AACTTAGCAA GGCCTTTGTT CAGATTCGTC TTGGTGTTTT TTTGTCTTCA 000560 000561 TTCCTTTCCC CCCAATATAA GGAACAGTCT TCTGTAATGA GAGTCTTATG ACTTATTTTA GAGAAAGGCC AGAGAATTCT 000640 000641 TTCATGGCCT GCTTCAGGGG AGAATGGTGG AAGAAGGTCA GAGAGACCTT CCTGCTTCTG CTGTCTCCTT AAATGCCAGC 000720 000721 ATGTCATATT CTAGGGTAGC GTGTTCTGGT CCCTGTTACT CATCTTGTAT TGTCCTTCAA GCGGCATCTT CCTGCTTCAT 000800 000801 TTCTTATTTG AGTTAAATAT CAAAGTAATA GGCATTACTT ACTTTTAGAA AATTGCAACC AATAAGAGGC ATTTCATTTG 000880 000881 TCGTGCATTT AACTTTTGAG ACATAATGAA TAGTTTCCTA AAACTTTTCA AAGCTGAATG TTATGGAAGA AACATTCTCA 000960 000961 CCATAACTCT TAAAAATTGC ATATCCTTAC AAGTGAATAC CATATCAAAA TATGAAAATC ATTTCAGATA TTTATTAACT 001040 001041 ACTTAAAACT GACAAATGGT AAACAGAAAT GTCATTTCTT TCATTAGTAC AGAGAAAGCT CCCTCACTCC TCCCAAATAT 001120 001121 CTATTGTGAT GAATTGGTTG ATTATTTTAA ACAATGTAGT TGCACAAATA GACATTAATG TGAATGATGA TAGCATGTCA 001200 001201 CTTCTGAGGA ATTGCATTTA GGAGGTACGT GTATGACAGC TTATGTGTAA TCTTCAGGCT TGTATTTATG CCACAAGAAA 001280 001281 ATAGACTTTC TTCAATGATT CACTTCATCA CAGGTGGCCT ACCTACCTGA AAGACATCTT CATGCCAAAG TTGGCTGACT 001360 001361 TTCTCATGCA CAACGAACCC ATATTCCCGT AGGAATTGAA GGATATGACT AATCAGTTGA AAACAGTTCT TTCATTTGTT 001440 001441 TAACATGTCA AACTCAGGAA CAAGCCCCAA GGTTCAAGTT TTACTGAAAG ACTTTTACCA TAGTGCTTTT TTGACATAGA 001520 001521 AAAGAAAAAC AGAACAATAA AAAAAAGAAA GTCAACAATT TTTTCAGTGA AGAGACTCAC AGAGATTGAA GGTTCTCCGA 001600 001601 AAACATTCAG GCCAATGCAT CATTTTACAT ATGAGAAAAC TGAAGTCCAG AGGTGACAAA ATTTGACAAA TCTACATAGC 001680 001681 TAAAATGAAA CCAAACAGAC TCGTAATCCT ACTTGGTGCT GGAGGGAGGC TGCAATCTGG GGAACTTGTT ATCCAGACAT 001760 001761 CCCAGCTGGT AGAGTGTGCT ACTACATAGA TAAAGTCACT GTGGTTAGTG TCTAGCCTCA GCTTTAAAGT TCTGGAAAAT 001840 001841 CAAATTTGTC AATATTCCCA TGGTTATTTA GAGTTAGGGG AACTAATATA AATTCCAAAA TATAAATTTA TAAAAGAAAA 001920 001921 TATTGTGACT TTTCTTGTTC TCTATGTAGA ACATGCCCAT AATCTTCCAT AATCATCCTT ATGACATGCA GCATCCTTAC 002000 002001 AATGACTGAG AAGTGGTAAA TTTGGAAGCT TCTTAGGTGA GTGTCGAGAG GGCCGAGGAA CAGAATAGTC TCGGGACATC 002080 002081 TAGTCATCCC AATTTTACAA TTGAGCTATA GGCTGATAAT ACCACTGTCT CTGTTCTCTA AATAAGCATG GCAAAATTGT 002160 002161 GGTTTTCTGA ATGTCGTTCA TCAATAATCC AAGCTGGCTT TTTCACAGTT AGTGTCTAGA TAAGGTTCAA CAACATACAT 002240 002241 GTGGTTTCTC ATGGTTGTAT TTTATTTACA TTCTATTCCC CCTTTCAGAC CAATCAATCA CCTTGATTGA AGTTCTGACT 002320 002321 GTGGTCTTGC TAAGAATTCT TCTGGAATAT GATCCCTTTT GCTTGTCTCT TCAGCTTGCT TGGCAACTTT CTACCCACTT 002400 002401 TCCTCAAAAT TCCGAGACAT CAGACTCACC TCCAGTTCAT CTCCAGTTCA TGTGACAGCT GCTGTCCCTG CTGGTGAAGT 002480 002481 GGCTGTGCTG TCTGGGGTAT ACACCCTGGG GTTCATCGTC ACACACCAAG AATTCAGGAC ACAATCACAT GTGGGTGGGT 002560 002561 TAGGGAGTGG AAAATTTAAT AGATAGAAGA AAGGAGAGAG GAGAGCAGCT CTTAGAGAGA GAGAGAGAGA GAGACATCTG 002640 002641 AAAAGTGGGG AGGCAGTGGA CCAAAACAGA TATAATAAGT TGGAGAAGGC GGTGTCTGAT TTACATAGGG CTCACAGACT 002720 002721 GGTTCCATCA GGTATGACGT CTACATAGTG TGCGGGGGAA GGCTGGTTGC CCCACCCTAA TCTAATTATG CAAATAGGCT 002800 002801 TTCCAGTTGA TCAGAGCCAT CTTCTCTGCT CCTTACAATA CACTTGGCTG GCAGGGAAGG GAAGATGGAG CCACCAGTTT 002880 002881 GAAAATGTCT AGTCCTTAGT TCCTGCTGGC ATTCACCTAT GCAAGCTCCC AGCTTGCAGG CTGCTCTTTG TTAGAAAATG 002960 002961 ACTTGGGGCT GCTTTTCATT AAAAAGAAAA GCCTTACCCA GGACTCCCAT GCCCTTGCTA TCTGCCTAAG CAATTCCTTC 003040 003041 TTAACTCCTA TATCCCTGGG GAGATGGTAG GAGTGCTGCC CCTGTCTCCT TGCTTGAGAG GGGAACTGCC CCAGGGAACC 003120 003121 ACCGCCATCT TTCTCTATTG CCTGTGTGAC TGCAGCATGG TGAGGTTCTA AGTCCCTGTA CCCCTTTTGA CTAAGGATGT 003200 003201 TTTCCTTCTT CCCCATGATT TTGCTGGAGA ATGAGAGGCA GAATTAAAAC GTGCTGCATT TGTATTCAGA TGTAAAGTTT 003280 003281 GTGTCTCTGC AGAAAGCATT GCTTGTGTAG AGAAGGAAAG CATATTGTTT TAGTCCACAG GGGAGCTAGA AATGTGATCA 003360 003361 GTCATCAGAA TAAGGCAGAT GTGTGCTAAA TATTTCAGTC ACTTATTAGC AGATAATTTA TTGGCTTATT ATCAAATGTA 003440 003441 GCAAATATTT GCCATGTCTG CTTTGGGTTA CTTTTTTTGG GAAGCCTTAG GCCGATTTTT GGCAACAGGG ATTGAAAACA 003520 003521 TTTTACCACT TCCCTTACTG AAAAGGCCTT GTTGCCTGGG TGGGTGCCCA AGTCGTTGGT CTCACAGCTG AGGAAATCGA 003600 003601 CGATGCAGAC ACACCAAGGA CGAGGTCAGA GCAGAAGCAG AAGTTTAACA GGTGAAAGAA AGAGAACAGT TCTCTGCTGC 003680 003681 AGAGAGGGGT CCCAGAAAGG GTTGCCGTCC CACAGTAAAA TGAAAGGGTT TTTTTCATGC GCGTCCGTGT GAAGAGACAC 003760 003761 CAAACAGGCT TTGTGTGAGC AACGAAAGGA GTTGTTGTTT TGTAAGGGAT TGAGGTTTGG GAGATTAATC AGACACCATC 003840 003841 AGCAGGGAGA GCACCTGTGT TTTTGTGAAG AATTATGCCG AGGTAGGTAA CGGATGGAGA AGAAATTTGA GCTTTGGAGG 003920 003921 GGGATACCCG ATATCCTTTG GAGAATAAAT GCTGAAGGAG CAGAAGTATG TCTTGTTGAG AAGATTCAAA GGAGGGGCTA 004000 004001 CAAAGAAGAA GGTCATCAAT ATATTGAATA AGTTTCTTGC CCTCCAGAAA AGCAGAGAAA GGGTTGGGGC ACAGAAATAA 004080 004081 GGGATTGGGG CACAGAGATA AGAGGTCAGG GTGTGGAAAT AAGGGATTGG GGGTTCTTGC CCCCTAGAAA AGTGGGAAGG 004160 004161 GGGGTTGGGG CATGGAAATA AGGGATTGGG GCACAGAGAT AAGAGGTTGG GGTGTGGAAA TAAGGGATTG GGTCACAGAA 004240 004241 ATAAGAGGTC GGGGTGTGGA AATAAGGGAT TGGGGGTTCT TGCCCCCTAG AAAAGCGGGA CTTGCCACTA AGGGTGAAGG 004320 004321 AGAAGGGGTT GAGGGGTACT TTCCCCTCCC CCAGAAAAGT GGGACTTGCC ACTAAGGGTG AAGGAGAAGG GGTTGAGGGG 004400 004401 TTCTTGCCCC TGCCCCAGAA AATCAGAGAA GGGGTAGAGA CAAGAAGAGA AGGGGTTGGG GTACTTGCCC CTTCCCCAGA 004480 004481 AAAGCAGGGA AGGGGTAGAG ACACAGAGAG AAGGGGTTGG GGTACTTGCC CCTTCCCCAG AAAAGCAGAG AACGGGTAGA 004560 004561 GACACAGAGA GAAGGGGTTG GGGTACTTTC CCCTTCCCCA GAAAAGCGGG ACTTGCCGCT AAGGGTGAAG GACCAAGGCA 004640 004641 GGCATCCCTG CATGGTCTGA CACCCTTGAA ACGTGGGTGA ATAATCAGAG AGGTGTCCCT GCAATGATTA AACAGCAAGG 004720 004721 GAAGGCTGCC TTCCCAGTCC GTGACCAGCG CTGGAGTTTT GGGTCCACAG ATAAAACGTG TCTCCTTTGT CTCTACCAGA 004800 004801 AAATGAAAGG AATTGAAACT AAGAGAAGGG AGAGATTGAA GTGTGGCGCC AAGATTGAAA GGAGAAAGAG GTTGAGGGAT 004880 004881 AGTGAGGGAG GTTGGAGAAG AGAGTAAAAA GAGGCGGCTT ACTGGATTTA AAATTGGTGA GATGTTTCTT GGGCTGGTTG 004960 004961 GTCTGAGGAC CTAAGGTCGT AGGTGGATCT TTCTCATGGA GCAAAGAGCA GGAGGACGGG GGATTGATCT CCTAAGGGAG 005040 005041 GTCCCCCGAT CCGAGCCACG GCATCAAAGT TCACTCGAGT CCATGTGAAG AGACACCAAA CAGGCTTTGT GTGAGCAACA 005120 005121 TGGCTGTTTA TTTCACCTGG GGGCAGGCGG GCTGAGTCCG AAAAGAGAGT CAGCGAAGGG AGATGGGGTG GGGCCGTTTT 005200 005201 ATAGGATTAC TTCAGGCCAT CTGGGCGTAT ACGTGCAAGT CACAGGGGAT GCGATGGCTT GGCTTGGGCT CAGAGGCCTG 005280 005281 ACAGTTTTTA TAAGTGACCT AGTGGGGAGG CAGTATTTTA CCTACATAGG GTGTGAAAAA ACAGTTAAGA CCAGGTGTAC 005360 005361 CATCAGCATA GAGTGCGAAT CTCTGGCAGC CCCCATCCCA GCCTTTTATT ATGGAGGCGG GTCCTTTGCC TGAGCTACTC 005440 005441 CATGTTGCTT TCCTACTGTG CAGGTGAAAG CTATTCTAAA CCTTCTCTAA CAAAGCTTAA AAACATCCTA AGAAAGACTG 005520 005521 TAAAGGTCAA ACATCCTCAA AGAGATTAAT CTCCTTCCAG AACAAAGTAC AGAGTATTTT AAAGGAAGAC AGGAATCCAG 005600 005601 ACATTGAACA ACAGTGGTGA TGTCAAATAT CCAATTAAAA TTACTAGACA TGTGGGGAAG CAAGCAAATG TGACCCTACC 005680 005681 AAGAAAAAAA ATCAGTTGAT AGAAACAGAG CAGTGACTTT CTAGTTACCA AAGCTAATGA TTTTAATTTA GTTGTGATCA 005760 005761 TCCTATTTGA TCCATACTGT GGGTTTGTTT GCCAGGATGC TCAAAATTGA AAGTTGAAAC TTGTAATAAA TTTAGCAACG 005840 005841 ACATGTGTCC CCAAATCTTA AATTGAGATT TTCCAAGATC TTTGGTAACA CAAGGCACAC ACATATGCCT CACTGAGTGC 005920 005921 AAGCTCCACT GCCTTATGGT GCCTCCCTGA TGCCGAGGAC TTGGTAACCG TGCACTAATT CTGTGTGGGG GTATTATTTT 006000 006001 CCCCATTTTA CAAATGAGGA ATCTGAGGTT CATACAGTGT AAGTGCGGAT CATAAGTGAT ACCATAAGTG TCACAGCCTG 006080 006081 ATATCTTGAA AACTCTTTAA CCGGTTCTCA TTCATTCATT TATGCACCCT TTAGTTTATT CATCCATTAA TAGTATATTG 006160 006161 CTGTTCTCTG TGTGCCAAGG ACTGTTCTGG AATCTGAGAC ATACGAAGAT TTCTTACATC CCCACAGTTG AGTGAGAATG 006240 006241 ACAGAAATCA TGACACCAGC TGGCAGGTGC TGCAGTGAAG GTGTATGCAG AGGAGTTTTG AGAACTTAGA AGGGAAGAGT 006320 006321 CATTTAGTAG AAGAGAGTAC ATCTGAGCTT CCCATTTCTG GGACTCTCTA TGTCCAGCAT GGTAATGGAG TCTTACATTC 006400 006401 ATCTCCTTTT TCACCTGCCA GTTTTCACTG ATTCTTATGT CTCAGTATAA ATTCCACTTT GGAAAATACT TTCATGACTC 006480 006481 CTTTAAGCAA ACCTGATTTA TTCTTTAAAT TTTTATTATG TTTTTACCTT TGTCCTTAGG TGAGACCACT CCAAGTTATT 006560 006561 TCAAGCAAGT GGGATCCATC CTGCTCATAT TTCCAATCCC CTCTTCCATC CCATCCAAGT CTCCATCACT TACCATATCT 006640 006641 TCCTTCAGGA CACAGGAGTC AATAGGCCAC ACCTGGAAAC CATCTGAT |
Predicted Small Protein
Name | NONHSAT035100_smProtein_4703:4906 |
Length | 68 |
Molecular weight | 8016.3111 |
Aromaticity | 0.0746268656716 |
Instability index | 91.8328358209 |
Isoelectric point | 10.5309448242 |
Runs | 12 |
Runs residual | 0.0357896381965 |
Runs probability | 0.0406509450628 |
Amino acid sequence | MIKQQGKAAFPVRDQRWSFGSTDKTCLLCLYQKMKGIETKRRERLKCGAKIERRKRLRDS EGGWRRE |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLHHHHHEEHHHLLLLLEELHHHHHLLLEEEHHHHLLLL LLLLLLL |
PRMN | - |
PiMo | - |