NONHSAT035207
Revision as of 21:30, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT035207 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2456 nt |
Genomic location |
chr13-:111794731..111801055 |
Exon number |
3 |
Exons |
111794731..111796923,111797032..111797138,111800900..111801055 |
Genome context |
|
Sequence |
000001 tagcctggaa gttttccatc ttgcagcagt gcacctcagg aagatgacag gtgcaaagtc tgcctttctg tatgaattgg 000080
000081 gagaatggcc atcatgagag aggagatggg acggcccaac cagcttcatg tcttccatgg cttggcacct tctaagGCCA 000160 000161 ACGTGACTCC CCCGTCACAA AACAGTCCTC AAGACAGATG GGCTGCCAGC GTGCTGGGGT CTTCATAGGG CAGATCTCCA 000240 000241 CCATGTCATG CAGAGATGCA GTGCTGTCTT CTGATCAGGA ATTATGCTCT TCCACGGCAC TCTGGCTCAT TCCACAGTCA 000320 000321 ATAATGTTAA ATGGAGTGAA AATGTAGGTC AGTGGAGCTA ACTTGGAAGT CTCCAGGACA ACTCTTCCTC CAAATCCATT 000400 000401 GGAAAACATG AAGCAACAGG CAGAAATGCC AAGGATTTGA CTGCTAAATA CCAGATAAGT AAGCTGCTCC CCCAAAAAGT 000480 000481 CTTCAGCATA CTAAGCAAGT CGTTTACTGG AAGAAATTTA AACCTTTTTT AAAGCATGTT TCTCTTTTGC ATTCCTTCTT 000560 000561 CAAGAAATCC CAAAGCCCAA CTCTAAATGA AATGCTGCAG CCATCTGGGA ACAAACAAAT TGTTTTCCAT GAGTATGGAA 000640 000641 CTGGCCAGAT TATGAAGGGT AGTAATAGAT ACAAGTGTAC CAAACCTCCA GTTCCCAACC TAAATTCAGA TATGCCAGAG 000720 000721 ACATGAAATG TCAAAGAGAG ACCAACAAGA CTACAGTGCT TCAACTGACT CATGCATCCC CTGAGGCTTG GTTCTCACAA 000800 000801 ACTCTAAAAG CAGTTTAAAA TCCCTCAGAG TTGGTGGCAA CAGTCCCAAA TTCATAGCAA TGCCAAAAAT GGATAACAAA 000880 000881 ATATTTAAAG ATAAAACTTC ATCAGATAAC CCAGAATACA TTTCACCATT GAGTCGTATT TTGTTCTCCC AGTATTGTTA 000960 000961 GATGAAAACG TAGCAGTTGT ATCTTAATTG TTGAATGAGA GTGAGCTGGG AAACAGCACT TGCCCTGCCA CCCCTCAAGG 001040 001041 TTAGGCTGCA GCGATGCAGA TCCCCAGGAA GCAAGTGCAG CTGGGGTGGG CACCGTTGAG GTCTCGCCAC TTCCATCGGC 001120 001121 AGCCACCATT CCATGTGCCC TTGAAGAATC TGGGTACAAG AAAACTGAGA GCAGTACAGA TTCATAAGAC AACTCAAGTT 001200 001201 GAGTCTGGTG GTCGAAGATT GTTCTTTCAC CTGTTCACGT GGAATAATTG TCTTTTTTCT TTCACCTTCA TGCTTGTGAC 001280 001281 CTAATGGAAA CAGACTGTAA ATGATGGCAT GGCATTCTGT GAATCAGAGC TGCCCATCAC TTTCTTGTTA AGCTCCCTTG 001360 001361 CTCTATTGTT TCCCACCCTT TGGCATGTTC CCTCTCCCAC TGAGTGCACT TCAGCATGGC TGGTGATTAT TTTCTTATTG 001440 001441 CCCATTGTTA AAGACACCTA TGGAGAAGGC TGTGGCCTCT GACGGAAATG TGCTAGTGAA TCCAAGGTGG GTACTAGCTG 001520 001521 TGTAGTCATT GTCTGGGTGA GTTTCAAAAT GAGGCAGGGT CATGTCCACC CTCAGCACAA GCAGTCTGTT CTCTGCCGGG 001600 001601 ATGCTGCCTC CTGTATCTAC TCTGCCTCAC CAATAACCCA ATGTCCTATT CTTGACCAAG GCACCTTGGT GAGAATGGCA 001680 001681 GCTCCTGTCC CTGCAGTCCC GAGTGCTACT CCGCTGTTCA TACTTGTGTT CTCAGACGTC TAGGGTTTTT TATGGCGGCC 001760 001761 CTGCCTTTGT TTGCCTCCAC CACTCAGATT TGCTTCTGAA GTGTCCTACT GCCACCCAGC TCCACACACA GTGAAGTCAG 001840 001841 GGGGCAAGAG TGGGAGCTCC GCAGTCATGC AGTGTTTTGT TCCTGGCCTT TCCCACTCAA GAGTCTTTGC TTCAAAGCTG 001920 001921 TGTTTAATGC AAGTTCAAGT CTCAGAGCCA CCTAAGAGAA GACTGAACCC GGCCACCTAG GAAGAAACTG TTTTCATCCA 002000 002001 CATGTTAACT TGTGGGGGAT TTGAAGGCAT GCAAAGAGGC AGGCTCATTT TGGAGAGGAG ATGGTGAAGC AGGAGGGAGC 002080 002081 CATTCACCCA GAGGAAGAAA GTGAAATAAG GGGACTGGAA ACAGCTGAGG ACATCCACAG TTAAGCACAT CTCTCTATAA 002160 002161 ATAGCAGTTG GGGCTGCCCT AGAGAGAGAG GTGAGAGGAT AGGAAGAGAG GGCAGGAAGC ATTGGCCAAG GACACTTGTG 002240 002241 GGCTATAAAA GCCTCTTGCA TGAAAGATGG GCCAGTTGGG ACTTTCATAT TATCTGTGAG TAATAAAAAG GTTGACAAAA 002320 002321 AGATCATTAT TACCCAAAAC TCAAGTATCA GCAGGGTGGG CTGAAATCAA TAGGGCCATA GTTGTGAATA AGATGTGTAG 002400 002401 CAATCTGTAC TTGGGAAATG CATTTTTTAA AAACCACTTA TAAACTGATC TTCCAT |
Predicted Small Protein
Name | NONHSAT035207_smProtein_197:346 |
Length | 50 |
Molecular weight | 5278.178 |
Aromaticity | 0.0408163265306 |
Instability index | 58.3285714286 |
Isoelectric point | 5.86968994141 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.0354570256532 |
Amino acid sequence | MGCQRAGVFIGQISTMSCRDAVLSSDQELCSSTALWLIPQSIMLNGVKM |
Secondary structure | LLLEELEEEEEEEELLLHHHHLLLLLHHHHHHHHHHHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |