NONHSAT035599
Revision as of 21:32, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT035599 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4900 nt |
Genomic location |
chr14-:21123297..21128600 |
Exon number |
3 |
Exons |
21123297..21123415,21123457..21126439,21126803..21128600 |
Genome context |
|
Sequence |
000001 CCTCTTTTCC TCCTCCAGTG TCCTCTCCTC CACTGGACCC ACCCATCAGT CTCACCAAGC CCTCTGCCCT CGCCGTCTTA 000080
000081 CCTCATTTTC CCTCTGGCCA CTAAGGGCTG TCATCTTCAC AAGCAGAAAG AGCGATGCAG AGGGAGAGGA AGGCCACAGG 000160 000161 TGAGAGCTCC TCCTCGTGGA TCGTGGCTAT CGGCGCCCCA GAGACGCCAG GCACCCCCCC GGGCCCAGAG GATTTGCTCT 000240 000241 GTCCGGAAAG GGGCGCAGTG GAGACCGGCG CAGAGTTCTC TTCCAAGTCG GGTTCCAATT AACTCAACGA GTATTGGATC 000320 000321 TCCGGTGGTC CAGGGACTTG GCTTCCTCCA TTTGCAGAAA GTCCAGTGAC CCAGCCTTAA CAGTGTGCAT CCTTCGATAG 000400 000401 CTCAGCTGGT AGAGCGGAGG ACTGTAGACT GCGGAAACGT TTGTGGACAT CCTTAGGTCG CTGGTTCAAT TCCGGCTCGA 000480 000481 AGGAAGCGCC TGACTCTTTT GCGCACAATG CTGCCTGGCT GCACCTGTTC CTCGTCAAAG ACCTTGCAGC CTTCCAGTCA 000560 000561 TAACTACACT TTCCCCAGGA AAACCCAGCA AAATCCTGCC TTTCCTGATC ACAGGCCTGG GAGCCTATTC ATTCTTCCCG 000640 000641 AATCCTCATA GTCTTCAGCT CAAAACAGTG CCCCTTGCCT TGTGACCCAG CCAGACCCCA ATTCGTGCCC CCACCATCCT 000720 000721 ACGCCTTTCC ACTTGTATTT ACAAACTGCC CACCCATCCC CCTGTCCCAG ACCCGTCAAG CTTCATCTTT CCTGAGCTTT 000800 000801 CACAAGTTTT TATGTTGCTA CAGCCAAGTT TGGCTACTGC TGGAAAAGTA AGGATATCTA ATACTCAGTT CAAAGTCTGC 000880 000881 AAAAACACCT GCACCAAGTG CCCTGCCTAC TTGGGAGGGT AAGGGAAAGG GAAAGCGAGT ACCAAAGAAG TGCAGACTTC 000960 000961 AAAACAGCTT CAGTGATCCT GGAGAGTTAG GGGCTATTGG GTCCATGGCA GGGAGCAGAC GTAAAGCTTG AGTGACAGCT 001040 001041 GCCTTTATAC AGAGGCACGT GGATTTGCCT CCTTAGACAG GCCACTGCCT CGTGGGTCTA AGCAGTTCGG AGCGTTTGCT 001120 001121 CTGGGACCTA GAGGCACAGT TGGGTTCTCC TACTCCCAAG AAAAATGTGC TGAGGCCCAG TCAGAGAGAA TGGAGTCAGA 001200 001201 AATGGACTGG GCTTTATCAA TCAAGTGAAG CTTCAACTCT GGGGAGTTGG AGTGGGTTTG GTGGATATGT GGCAGAGAAG 001280 001281 AAAGCCAATG AGCATCCTTT GGTCTCATCA CATAATCTTG GAAAAAGCTT CCCGATGTTT GATGTAAAGA TGCAACCTAT 001360 001361 CAGAGAGTAC TCCAAACTGA ATGGCCCAGG AAAGCATGGC CTTCTGAAGC CTGCTTAGGA CTGGCTTGCC CCATCTACTA 001440 001441 CCTGCTGGGT CCACATGAAC TGTTTAATTG TGCCTCTCAA ACTGGATACT GCACATATTA CTGCACATAT CTTTTTCACA 001520 001521 TGGAAAGCAG CTCCTGGTAT CCCGCCACCG CCTATTCTCC CCCACGTCAC CCCGACTGTG TCAACCTTTC TTCTTTGGTG 001600 001601 TCACCAGTGC TCTGGGATGC TTCTATGGCT CTGGAGGCAC AGAGAGACCC CAGCTCCAAT GACACCAAAG GCAAAGACCA 001680 001681 GCTAACAAAG AGGGACCAAA GGTAGCACCT CAGGCCTTCA TTGGATATAT TCCTGATGGG GCGTGGAGTC ACCAGAGCCC 001760 001761 TTGGAACCTT TGCTCAGTGC TTTGGGGAAA AACCAGAGAA ACCCACAGAA CTTTGCCCTA CTTCAGAAAT CAGCAGCTTC 001840 001841 TGATTGGAAT TCTCAGCCTG TTTGCAGAAG AGGGTATCTC ACATGTGCCT CTGCAAGCCT GGGAGAGATT TCCTCACCTC 001920 001921 ACTTCCCAGT GCACCTCAAT GCACCAAAAT GTGAGCATAG ACTACTATGA GGAGAAGGGC GGGGCACCTG GGGAGGAGGG 002000 002001 CCCTGTGTGT GTGGTAGGGG AGGGAGTAGA GAGGCCAGAC TATTATGGAA GCGCCCATTA GAGACCTGCA CCAGACTCTG 002080 002081 AGGTTGGGTT GGAGTTGTCA GCTGCCTATC CAGCGCCCAT TAGGGTTCTC CTCTTTTCCT CCTCCAGCGT TCTCTCCCCG 002160 002161 ACTAGACCCA CCCAACCACC TCGCCAATCC CTGTGCCCTC GCTGACTCAC CTTCTCATTT TCTCTCAGGC CACTGGGGGC 002240 002241 TGTCATCCTC ACCTGTAGAA AGGTGGATGC TCAGGGAGAG GAAGGCTGTC ACAGATGAGA GCTCCTCCTC GTGGATGGTG 002320 002321 GCTATCAGAG CCCGAGAGAC ACCAGGCATC CTCGCCCAGA GGATTTGCTC CGCCCTGAAA GGGGTGTGGT GTCAAGCGGC 002400 002401 GCAGGGTTCT CTTCCAAGGT GGGTGCCAAC CAACCCAACG CGTATTGGAC CTCAAGCATT CCAGGGATGT GGCTCCCTCT 002480 002481 GTTTGCAGAA AGTCCAATGA ACCAGCTTTG ATAGCATGCA TCCTTCGATA GCTCAGCTGG TAGAGCGGAG GACTGTAGAT 002560 002561 TGTATAGACA TTTGCGGACA TCCTTAGGTC GCTGGTTCGA TTCCAGCTCG AAGGAAGTGC GTGATGCTTT TGGTTAAAAG 002640 002641 CCCTGCAGCT TCCAAGTAGT AACCACACTC TCCCGGGCAA AACACCCACG AAGTCTTTCC TGATCACCTA GCTTCCCACG 002720 002721 CCTTGCTTCT ACTTTGTGAC CCCACTAATC CCTCTATTCA TGCTGACCAC TACTTCCCCA CCCTGTGCTC CTTCGCTTTT 002800 002801 CTTCACAGAC TGCTCTCGAG CTTGAGCATC TCCACTGGCT GTGACAAAAC CGCTGTGCTC ACCTTTGACA GAGCTCTCCT 002880 002881 GACCAGGTGG GCAAAGCCTG GAAGGTCAAG TTCCCTGGAG AACGTCAAGC TTACTTGACA AGGGTGTAAA GTGGGGATAA 002960 002961 CCGTGGTATC TTCCGTGAAA ACTCACCCTC TCACTCTCAT CCATCTCAGG CTCTTTATCA CTGCATTGAG ATCTGACAGT 003040 003041 CTCATGTTTG TCTCTGTCTC ATTCTCTTTC TCTCTTTCAC CGTTTCTCTG TCTCTGTATA TTTCTCTTTG TCTCTGTGTC 003120 003121 TCTGCCTCCC TATCTCTCTT CCCTGAGCCC TCAGCCTGCC CCTCTCATTC TCCTTGGCTG GAAATGTATA GACCTATACA 003200 003201 GGCGTAAAGA AAATGTTCAT TCCCACTTTG CTGTGTCTAC TTTGGGGAGA CAGCTGTCAC CCTGAGAATT TCCTAATCCT 003280 003281 AAGAACTTCC ATTAGCAAGG TCAGGTTGCC CTTTAGGTTG AGGACAAGGT GAGTCTATCC CCTATCCCCA TAGCTTTTCC 003360 003361 CAAATCCCTC AAGCCTCACT TTTTCTGAGC CTTCACAACT TTTCATGCTG CTACAGCGGA GTTTGGCCCC TGCTAGAAAA 003440 003441 GAAAGGACCT AATATTCAGT TCAAAGCCAG CAAAAACACC TGTGTTGAGT GCCCTGCTAC TTGAGAGGGT AAGGGAGATG 003520 003521 GAAGGGGAGT ACAAAAGTGC AGGCTGGAAA AGAGCTTCAG TGATCCTGGA GAGTTAGAGG CTGTTGGGTC CATGGCAGGG 003600 003601 AGCAGAAGTA AAGCTTGAGT GACAGCTGTC ATTATACAGA GGCACACGAA TTCGCTGCCT TAGGCCACTG CCTGGTGGGT 003680 003681 CTGAGCAGTT TGGAGCTTTG GGACTAGAGG CACAGTTGGA CTCTACCCTC ACCCCAAAGG AAAAAGTGCT GAGGCCTAAT 003760 003761 CAGAGAGAAT GAAGTAGGAA ATGGACTTAG GTTTTCTCCA ACGAACAGGG GTTACACCTC CAGGGAGATG GAGTGGGTTC 003840 003841 TGTGGGTATG GGGCAGAGAA GAAAGCCAAC AAGCGTTCCT TGGTCTCATC TCACCATCTC AGAAAAAATC TCCAGAGATT 003920 003921 TGATGCGCAC ATGCAACCTA TCACAGAGAG CACTCCAAGC CAAATGGCCC ATGGGAACGT GGCCCTCTGA AACCCTCTGG 004000 004001 GGACTGGGAC ACCTGCCTCC ACTACCTGCT GTGGCCACAA GAGCTGTTTC ATTGCAGGTC TCAAACTGAA GACTACACAG 004080 004081 GTCTTTCTTG GGAAGCAGCT CCTGATCTCC CTCCACCTCC CTATTTCCCC CAATGTTCCC CTGGCTTTGT CAGCCTTTCC 004160 004161 TGCTTCTCAT TGCTAACAGA AGGAGGCCAA GCTGTGGCAT CGCCAGTGCC CAGGATGATT CTATGGCTTT GGAGCCACAG 004240 004241 AGAGATCCCT GCCTCCAATG ACACCAAAGG CAGAGGCTAG CGAACACAGA CGAAATGTAG TACCTTTGTC CCTTATTGGA 004320 004321 TAAGTTCATG ATGGGATATA GAGACCCCCA GGTTCTTCGG AACCTCTGTT TAGTGTTTTG GTGGGAAAAT CAGAGGTGAG 004400 004401 CCAGTGAATG GGCTTTGGTG GCCAGCACAA GCAAGGTTGA AACCTGGGTA CCAACTCTTC CTGTTTGAGC CATGACAGAG 004480 004481 TAGCTGGGTT CTGTGAGCAT CTGACCCTTG CCCTCAGAGA TCCAGACCCA CTTGCCATAA GACAGGGAGT GGACTTAAAC 004560 004561 TCAATGGTGG CCAGGTTCCT TGGATGTGGC TTGCTGCACC TCCAGTAGGT GTTCAGCTGG GGGGTGGGTG TCCCAGTGGT 004640 004641 CTTGGGGTAG TGGTGTTGCG GGAAGTCAGG GACCCCAAAC AGAGGGACCG GCTGAAGCCA TGAGAGAAGA ATGTGGATTG 004720 004721 TGAAGATTTT ATGGACATTT ATTAGTTCCC CAAATTAATA CTTTTGTAAT TTCTTGTGCC TTGGACACTT ATCACTTCCC 004800 004801 CAATCAATAC CCTTGTGATT TCCTATGCCT CTCTTTACTT TAATCTCTTA ATCCTGTCAG TTGAGGAGGA TGTATATTGT 004880 004881 CTCAGGACCC TGTAATAATT |
Predicted Small Protein
Name | NONHSAT035599_smProtein_1454:1684 |
Length | 77 |
Molecular weight | 8566.1869 |
Aromaticity | 0.0921052631579 |
Instability index | 51.2960526316 |
Isoelectric point | 9.41790771484 |
Runs | 9 |
Runs residual | 0.0229885057471 |
Runs probability | 0.0410999234529 |
Amino acid sequence | MNCLIVPLKLDTAHITAHIFFTWKAAPGIPPPPILPHVTPTVSTFLLWCHQCSGMLLWLW RHRETPAPMTPKAKTS |
Secondary structure | LLEEEEEEELLLHHHEEEHHHHHLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL LLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiii iiiiiiiiiiiiiiii |