NONHSAT037283
Revision as of 21:39, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT037283 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1922 nt |
Genomic location |
chr14+:62268431..62270352 |
Exon number |
1 |
Exons |
62268431..62270352 |
Genome context |
|
Sequence |
000001 TTTTTGCTGT AGGTTTATAC TATTTTATAG ATACTATGAA TTTATACTGT AGGTGCTATA AGTTTAGCAA ATTTAGCTAC 000080
000081 CTTGAAGTGT TTGCTAGTTT CAACATTGGG GGCATCAGTA TGTCTGTTTC CCCCAAAGAG TATATCTGTT TTTATTGACC 000160 000161 GATTTATTTT TTTATTGACT GTGGTTTACA TTTTCATGTT TCTTTCCCTG TCTACTAATA TTTTATTGTA TGATAATACA 000240 000241 TGTTAGGGAC TCTGAATTCT ATCACCTTCC TCTAAAGAGT GTTGAGTTTT GTTCTATAAG GCAGTTAAGT TATGACAGAG 000320 000321 CATCTTATAC TTAAAGGGGC TTGATTGTAG GCTTTGTCAG GGTGGATCTA TTCAGCTTGA TCCTTAGTTT TAGGGCAAAT 000400 000401 CCCTTAGTCC TGGAAGTGGT CCCTAAATCT AAGGTGTGGG CTTTTTGAAG TTTAATGGAA ACCGTGAAGT GTTTGCCACA 000480 000481 TCACTCTATT CTTGCAAGAC TTGAACTTTG AACTCAGGAG ACCTTTGGGT GGTCAGCTGC TGAAATACCC ACTCGGGACT 000560 000561 TTCAGATTTC TAGCTCTTTG CCCTAGAATC ATGGGGATTT TTGCCTTGCT TGCAGCCAAA GATCTGAGGG GATTTTATAC 000640 000641 ACAGATTTTG GAGTTTCTAT GATTGCTCCT TTTAGGGATT TCCCATCTTG ACTTCTAACC ACTCTGACAG CCCAAACTCC 000720 000721 ATTCTCTGAC TCCTCAGATA GGTAAGACTA TGACATTCTG CCTGAGTCCT ACCTGCCCAG TGCCATGGAC AGGGGAGTGC 000800 000801 ACTCAGGTAA AGTTGTATAA ACATGCATAT CTCCTTTACA GCATTGAATC CCTTACAGTT GCTATCACGG AAAGTAATCA 000880 000881 TTAGGTGACA TCCCCCTATT TACCCTGAAG TTACTGAACC ATCTTCCCTG GATTTGTGCA GGGTGTCTCC TAATTTACGA 000960 000961 AGATTCCAAT TAGATTGGGA GTATGACTTA ACTCATTTAA GTCACCCAAA TGCTATTTGA TCATAATTTA GTGTCTTGTT 001040 001041 AACCTAATGG CTTGAAATAA ATTGACGCAC TTCTGAAAAT AGGGTAAAAA TCCCTGATTT TTCAAGGAGG CTAATCTTCC 001120 001121 GTAAATGCTA AGCACTATAG AATCAATTAT GTTATTAATT TGCTCTTGGT TGCAAGCTAC AAAGCTTGAT CAGGCTAATT 001200 001201 ACAGATTATG CTCTGAGGAA AATATTTTTA TATGCACTAT TTTTTTCTTG CAGGCACTTT AATATGAGGT TTTAAAAAAC 001280 001281 CTTACTTAAG ACAAATAAAA AAGAAAACCT TCATGTAATT ACTTTACCTG CAGGCTAATT TTTAAATACT TCAACACCGT 001360 001361 AACAATTAAA TGGGCTATGT TAGCTTCAGT TGACAACATT TATTTATTTA TTTATTTGCA ATGAGACCTC ATAATATCCA 001440 001441 CCAGGCTGGT CTCGAACTCC TGGGCTCAAG AGATCCTCTT GTCTTAGCCT CCCAAATAGC TGGGCCTACA GGTGCCAGCC 001520 001521 ATTCTGCCTA GCTAGTTGAT CACTTTTAGG GAAGGCAACA CCCACAAGAT TTGTTGGACC TGAACTTCTT ATGGTGTGTC 001600 001601 TGATTTTAAA TGAAATGAAT TTTGCTAAAG TCTCACAAAT GGTTAACTCT TCTGCCTTTA TTACATGTTT TAAATAGTTG 001680 001681 ATTTATCTCT TAGTTTCTTG CAGCATAATT GGTATATTGC TTCTCTTGCT AACATGTCAT TTTACTGTAG GTGGTTAACT 001760 001761 GAATGTATTC TCTCTGTAAA TTTCAACAAG TTGCTCATAA AATTTTCCCA GCAGAAACTT TTTGTTTCGT ATTTAAAAAC 001840 001841 TGAATACACT GTCCTTTATT TAGAGAGTGT ATGTTTGGAA AATCATCCTG TTTATTTGTA AATAAAGATG AACCAGCCAG 001920 001921 TC |
Predicted Small Protein
Name | NONHSAT037283_smProtein_1733:1900 |
Length | 56 |
Molecular weight | 6659.8071 |
Aromaticity | 0.181818181818 |
Instability index | 64.3565454545 |
Isoelectric point | 7.69903564453 |
Runs | 7 |
Runs residual | 0.0242424242424 |
Runs probability | 0.00967774497186 |
Amino acid sequence | MSFYCRWLTECILSVNFNKLLIKFSQQKLFVSYLKTEYTVLYLESVCLENHPVYL |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLEEEEEEEEEEEELLLLEEL |
PRMN | - |
PiMo | - |