NONHSAT037831
Revision as of 21:42, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT037831 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3549 nt |
Genomic location |
chr14-:75411267..75414918 |
Exon number |
2 |
Exons |
75411267..75412978,75413082..75414918 |
Genome context |
|
Sequence |
000001 TGCGTGTCGT TCCCCTTCTC TGGGATGGGA GGCAGCTGCC ACGGGCCTCT GAAAGAGGTG CCTGGAGGCA AAGACATTGC 000080
000081 AAGTCTGAAC TTCGTTCTGG GGCAAGCTGT GTGCCCACAG GAGCGGGCAA ACGGGGCTGA GAAGCAGCAA GAAGGACAAG 000160 000161 CTCGGGTAGG AGAAAAGGGG CAGAAGAAGA GTGACACTGT GGCTTCCTTG ATGTTGCAGC ACCCCTCTAC GGCCCCTCCC 000240 000241 AATCCACAGA GCCTCTGACC AGCACCAGTC TTGCTGCCTG TGCTGGGGGC ACTTGGAACA TTGGTTAGCA GGAGCAACAG 000320 000321 GCCTGGCACT GCCAGCTAGG TTCAGGGAAG AGAGAAATGG GCTGAGCTGC TGCTCCTGGT ACTACTGGGC CATGGATGAA 000400 000401 GGCACCAGAC TAGAAGTCCA GAGCCCTAGC CAGGGGCGGC AGGAGGGAAG Actaccactt attgtgtacc tattctgtgc 000480 000481 ctagccccgc aggaggcact tgaatgtttc tcatttagtc acatacattt attgagcacc taccacatgc caggcattgt 000560 000561 cctgatggga tgcagtggtg agcaaggttc ctgctctcat aacaaccctg ggaggtaggc cctattgtca tccccatttt 000640 000641 acagatgaga aaatcaaggc tcaatacagt ttcatgattt atcacagcta gtgagtgtgg gaggagggat tctgggccct 000720 000721 gacctaactc gtaagccttc gtttttCAGG CTACCTTTCA TGGCCATGAC CACTTTTCTA ATAGCCCCCA GGCTTAGCCT 000800 000801 TGCCTCCTGG GCAGGGCTAT GGCTGCCCCT TTTGTTGGAG TGTTGGAGAC CCTGCCTCAA CTTGTTTCCA CCCATCCCTC 000880 000881 CAAGCCAGAG CTTAGCCATA TAACAAGAGC TCGGTAATGA ACCCTCCTGG GTGCAATGCT GGGTGGTGAC CCAGAGTCAC 000960 000961 CTTCTCCATC CCCTTTGCCC TGACAGCCAC TCTTTTGGGG CAGGcagatg aagagactga ggttccaaga gtgtctgtca 001040 001041 cttgcccaaT ATGGAGAGGT ACAACCAGAC AGTCCCAAGA GGCCCTGGTA CCTTGCCCTG GCTCCCAAGG GAGGAACCAG 001120 001121 CTGAGGGTAG CATGTCCTGG CCCCAAAGCT GACTGCTACC ATGCTGTCCC ATGTCTCTAC CCACTGTTCC CAGTGAAGAC 001200 001201 TGAGGCCCTA TCCCCTGCCA GGGGCCAGGC AACAGGGACA CCTTTCTTCT TGCTTCTGGG CCAACAGCCA CAGCCCTGGG 001280 001281 AGGCAGAGCC CAGACATGCC TGGTGACTTC AGGGCTGATG CTCCCTCCTT CCTCCCACCC CGTCGCTCAC TCCCCATGTT 001360 001361 GTTCCGGATG GAGTGGGGCT GTGCCCTGAC AGGCAGCCAG TCCGCTGTCT GGCCATCATC TCCTGTCCCT GAGGAAATTC 001440 001441 CCAGAATGCA CCCTGgaagg aacggaaaaa agcagcaaag aaagtgagaa agaaaaagca acagagaaca gacagaaaca 001520 001521 aCCAAATTTG ATGCCAAGAG GCTGAGAAGT GCAGAAGCGG GTGGCAGGGG TCCCCAGGAG GTTGATTTGT CCCTCTCGTG 001600 001601 GTGGGGTCAC CAGAGCCTGG AGTGGGAGTG AAGCCTTGAG GCTCTGGCCA CCTCTCCCTT GCCAACTCCA TGCTACCCCC 001680 001681 TAGTGGCCTC AGTGTCAGCT GCAGGACCAG GACTGGGGAT GTCGGAGGGG ACCTGTCCGG GCGGCAGGGA GCCCCACTTA 001760 001761 TTGCTTTCCT AACGTTCCTC TGCCCCTCTC TCTGTCTGTT TCCCTAGGCC TCTGCGGGAG AAGATGAAGC CGGAAAGGAG 001840 001841 GAGACCCAAG GGCAGGGGGA AGAGGAGGAG AGAGAAGCAG AGACCCACAG ACTGCCACCT GTGAGTGTGC GGGGTCCCAG 001920 001921 GGATGGCGAG GAGGCTGGGC CCGAGGGGAG CCCCGCCTTG CCGCCAGGGT TAGGTTGGGG AGGGGGAGAG GCAGGACTGA 002000 002001 GGCCAGTCTT GGGGGCAGAA CAGGGAGCTG CACCTCCTCA AGACTCTAgg gcccaggaag catcagtgga ccttggtttt 002080 002081 tgtcccggct tagccctagg tttccattga ccttcaacaa atcatttcac ctttgtcagc ctagcttttc tctgtgtaga 002160 002161 atgaggggCA GGAGGTCCAG CAAACattca gtcactctac aaacatttac tgagcactta ctgtgtgtca ggtacatctg 002240 002241 tgagcaaaca aacaggattc ctgcacatta gtgtttacct tttagtgATT AAAAGTCTGT CATCAGCTGA GACGTTATCT 002320 002321 GGGGCCACTT CCTAGTAGCC CCGGGGAACA TGTGCCCCTC GCCACTGTCT CCCAGGAGTA TTTTTGCCTG TGGGTCCCCT 002400 002401 TGCTGCTTCT AACCCACTTC GTACCTTGTG GGCAGCAGAA TGGAGCCCCA GGCCTGAGTG TGGCTGGGAG AGAAGGATGA 002480 002481 GAGGAGGGAA AACCCAAATC TGTGAGAGTA AATAGAAAAA ATAAAATATT TCACGTGCAC AGTCAATCAG TCACTGAAGA 002560 002561 GAGGTGGCTC TCCTTCAGGG GCTAAGCCTC CCCCACGCAC GTGACTCCAG GAAGTCATTT CGTGCTATGG AGTGGAGTTG 002640 002641 ACCCAAGCCC TGACCCCATG AGCCCCACTC CATGAAGACA GGGATCCTGG GGACTGCGCC CCCTAGGGGT TTATGCTCTC 002720 002721 ATCTCTTTTC TGGGCCCGCG CGGCAATTTG GGAAACAAGC TGGCAGGGAA GTCCATCCAG GCCCGAGTTA CCCGCCGGCA 002800 002801 GCCGGAGGCA GAAAGTGTCC CGTGGCTCCT GTTCCCAAGG cagcagtctt cagacatttc actcgggaat ctcctgaaag 002880 002881 aatttcaaaa gtggccgggc gcagtggcta acacctgtaa tcccagcact ttgggaggcc gaagtgggta gatcacttga 002960 002961 ggtcagaagt tcgaggccag cctgaccaac acggtgaaac cacatctcta ctaaaaatac aaaattagct gggcgtgttg 003040 003041 gtgcatgcct gtaatctcag ctacttggga ggctgaggca ggagaatcgc ttgaacccgg gaggcggagg ttgcagtgag 003120 003121 ccgagatcac gccactgcac tccagcctgg gtgacagagc aagactccgt ctcaaaaaaa aaaaaaaaaa gaattccaaa 003200 003201 agcccatgtg ctcccttgcc cattcttaag ttgacattga acattttcat cagaattata agtcaagcca ggctcagtac 003280 003281 ctcatgcctg taattctagc actttgggag gccgaggcga gtggatcgct tgaggccagg agttcaagcc tagccggggc 003360 003361 aacatggtga aacctcgtct ctacaaaaaa aatacaaaaa ctagctggac gtggtgccat gtgcctatag tcccaactac 003440 003441 tcaggaggct gaggtggaat gatcacctga gcctgggagg tcaaggctgc agtgagccga gatagatcca ctgcacctca 003520 003521 gcctgggtga cagagtaaga acctgtctc |
Predicted Small Protein
Name | NONHSAT037831_smProtein_1295:1486 |
Length | 64 |
Molecular weight | 7119.1843 |
Aromaticity | 0.0793650793651 |
Instability index | 90.0920634921 |
Isoelectric point | 10.8060913086 |
Runs | 6 |
Runs residual | 0.0497246517655 |
Runs probability | 0.034402049108 |
Amino acid sequence | MPGDFRADAPSFLPPRRSLPMLFRMEWGCALTGSQSAVWPSSPVPEEIPRMHPGRNGKKQ QRK |
Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHHEEEEEELLLLLEEEELLLLLLLLLLLLLLLLLLLLL LLL |
PRMN | - |
PiMo | - |