NONHSAT039472
Revision as of 21:45, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT039472 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1048 nt |
Genomic location |
chr14+:96118405..96121621 |
Exon number |
3 |
Exons |
96118405..96118563,96118714..96118826,96120846..96121621 |
Genome context |
|
Sequence |
000001 ttaagaatgt gtttaacatt ctatcccaga caatgtgatg gtcatgaagt ctctgtcaga gaggaaagag ggagttaatc 000080
000081 tataatgaag atcaacagtg aagaggaaag gggtcttccc tggaacgctt cagtcatata cgacatttta cacaacaatA 000160 000161 ATGGACCTGT GTAAGGAGGT ATGTGTGGGA GAAGATTCCA GAAGGTCTTG AGACACTCCA GATGAAGGTT GGTGTGGGGC 000240 000241 TGTGCTGCTG GAGCACCAGA GAGTGAAAAG AGgttatctc cctctgtgcc aggccagagt gcagtggtgc aatcacggct 000320 000321 cactgtagtc tcaacctcct gggctcaaga gatcctccca cttcagcctc ccaagcagct aagactacag gcacgtgtca 000400 000401 tcatatctgg caaattaaaa aaaaaattat agagatgggc tctccctgtg tttccctggt tggtctcaaa ctcctgggct 000480 000481 caagtgatcc tcccatcttg gcctcccaac ttactgggat tacaggcatt tgccactgtg cccagcccat ttcaatattt 000560 000561 ctgatcaata aatgtgcctg tccttcagat tctcctttga attggctgtc acacctcttc agtttcttca ctgaggagtt 000640 000641 aaacataatc ttgagcagca cgtgatattg tttagctctg tgtccccacc aaatctcatc ttgaatcgta atccccctgt 000720 000721 gtgtcaaggg atggacctgg taggggatga ttggatcatg gggggtggtt ttccccatgg tgttcccata tagtgaatga 000800 000801 gttctcacga gatctgatgg tttaaaagtg tttggcagtt cccccttctc tctctctctc tctctctctc tctctctctc 000880 000881 tctctctctg gccactttgt gaaaaaggtg ctcgcttttc cttcgctttc tgccatgatt gtaagtttcc tgaggtctcc 000960 000961 ccagcgatgt ggaactgtga gttaattaaa cctctttcct ttataaatta cccagtttca ggtagttctt tatagcagtg 001040 001041 tgcaaatg |
Predicted Small Protein
Name | NONHSAT039472_smProtein_434:664 |
Length | 77 |
Molecular weight | 8049.3617 |
Aromaticity | 0.0657894736842 |
Instability index | 63.0210526316 |
Isoelectric point | 5.30352783203 |
Runs | 11 |
Runs residual | 0.00332728372656 |
Runs probability | 0.069695363813 |
Amino acid sequence | MGSPCVSLVGLKLLGSSDPPILASQLTGITGICHCAQPISIFLINKCACPSDSPLNWLSH LFSFFTEELNIILSST |
Secondary structure | LLLLLEEEEEEEELLLLLLHHHHHHHLLLLLEEELLLLEEEEEELLLLLLLLLHHHHHHH HHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooo oooooooooooooooo |