NONHSAT040062
Revision as of 21:47, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT040062 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2194 nt |
Genomic location |
chr14+:102352725..102354918 |
Exon number |
1 |
Exons |
102352725..102354918 |
Genome context |
|
Sequence |
000001 TCTCACTAAA GGCTTGGTGC TAGAATATGG CATTTGTGTC TGTGTGCATG CTTTTGATAG TCTTTTCTGT AATTGTGTGC 000080
000081 ATGCTTTTGA TAGTCTTTTC TGTAATTGTG TGCATGCTTT TGATAGTCTT TTCTGTAATT GTGTGCATGC TTTTGATAGT 000160 000161 CTTTTCTGTA ATTGTCCTGA TACGCGCAGT CAAAAGCAAG CATGCTATCT AGATTCCGTG ATTGGTTTGG GTCCTCATTG 000240 000241 TCAATACCAC TACCTCCTCA TTTCATGTGA GGAAAAAAAA AGAAGAAAGA TCTTGAGAGT TGCATTCAGC TCATCTAGGT 000320 000321 TTTTTTCTTT TCTTTTCTTT TCTTTTCTCC TTTTTTAAGG CAGGGTCTCA CTCTGTCACC CAGGCTGGAG TACAGTGATG 000400 000401 CTGTACTCCA TAGCTCACTG CAGCCTCAAA CCCCTGGGCT TAAGGGATCC TTCTACCTCA GCTTCCCAAG TAGCTGGGTC 000480 000481 TACAGATGTG TGCCACCACA TGCGGCTAAC TTTTAAAATT TTTGTAGAGA TGGAGATCTG TCTCACTGTG TTGCCCAGGC 000560 000561 TGGTCTCAAA CTCCTGGCCT CAAGTGATCC TCCTGCCTCA GCCTCCCAAA GCACTGGGAT TACAGGCGTG AGCCACCACA 000640 000641 CCCAGCCAGC TCATCTAAGT TCAATATAGA ACAGCTGTGT CTTGTAAGAA AAAACATTTT GAACATATTT GGCTCAACTT 000720 000721 AACTGAAAAT GTAAATATAA GGTTGCTGTT TATTTCTATG GTTTATCATT ACCGTCAGCT TAAGTGTGAG TTAAACAGTG 000800 000801 CTGTCCATAA CCCATGGTGC CTGCTCTGGC ACACAGCGGG ACCTGGAGGC TGGGCGGGCA GGGCAGTGTG CCGTTCCTTC 000880 000881 TCTTGCTGCA TAACCAGCCA TGGGTCATGC TCTATCCTCA CCCTGGCCCT GCAGCAAGGC TGTGCAGCAC CTGCTCATGC 000960 000961 TCTTATCTCA CAGAGAGATG CCATCAAACT GTCCCCATCA TCACCAGGAT GTGTCACTAC CTCACACCAT CCTGGAGCCA 001040 001041 GGAGCCACCG CCAGCTCAGT GGCTTCTGTC AGCATGGTCC ATCACTCCTC ACGATGCTGT CGTCTGCGCT AGGCTCATCC 001120 001121 AGACGGTTCT GCTCCGTGGC GTGTGCTGGG GCTGGAGTGT TCACAGGGGC TGCTGAGCAG GTCCCCACGC TGCCTCTGTG 001200 001201 ATGCCTTGAG CTCCTCCAGG TTGTCTGAGT TTCTACAGCC ACGGCCACGT CCAAGAGGGG AGAGGCAGGA CCCCCAGTCC 001280 001281 TCCTAAGAGT TTGGCTTGGA ACTGGTGCAG AGTGACTTCT GCCCTTTGTG TTGGTCAGAG CAGGGCACAA GGACAGCCCA 001360 001361 GCTTCAGAGG AAGGAGAAAT AGAGTCCACC TCTTCCCATG AGGCCAGAAT ACATCATACA GGCAGGAAAG GCATTTAGAA 001440 001441 TCCTTTCTGG AGACTTCTAT AGCCAGCAGG TTCCCAGCTT AGTGTCTGGG GGGTCTGATT CCCTTTCTGC TGAAAGAGTG 001520 001521 AGAAACACTC TCTCCGGCTC CCAGGGATCT CTGTTTCCCT CCCAGGGTGT CCCTGTTTGT CTCCCGCTGG AAAAGGAAGA 001600 001601 AGGAAAAGAA CTGTCCTTAT TTCTTCTTTC TTCTGCCTAC ATCAAAGCAG GTTTAAAAAA TTAGAAATTA AGAATTTATC 001680 001681 AGTAAGAATG TAGTAATGTT GATTTAGGAA AACAAAATGG CTTATAACTG CAAGCCATCC TTATGTAAAT GTTAAAGCTG 001760 001761 ATGGATCTAG ACCAGAAGGG GTCCAGGGGT CTTTGTCTCG GAGAGGCCCA GATCACAGCT CTCCAAGGTC CATGCGAGAG 001840 001841 GAATAGTAAA CTGAAGCCAC ACGGCTGCCG TGTATGCAAA GGGAGCCTGC AGGGTGAGTT TCGTAAATTA AAGCACCTCT 001920 001921 CGGTGTAGAC ACACACAGAC TGACTTCTGC TTGGTCACAG CTTCCAAGCC TCAGGGTAGG TGCAGGCTGA GGGACACCAG 002000 002001 GTGCGAGCAT TTTCTGTTTC TTGTCATGGC ACCAGTGTCG TTCCTGTCAC CCACGGCACT GAGCTCTGCC CTGGTAACGT 002080 002081 CCCTCCCTCC CTCTTAGGCT TTGGCCACCT GCATTGTTGT GCTACTGGGT CTCCCTGCTA AAGGTTCTGC TTCCTGGTTC 002160 002161 CTGCAAGAGC AGATCTCAGT TTTTCTGTTG TGTT |
Predicted Small Protein
Name | NONHSAT040062_smProtein_1397:1663 |
Length | 89 |
Molecular weight | 9450.6732 |
Aromaticity | 0.0795454545455 |
Instability index | 49.6989772727 |
Isoelectric point | 7.85736083984 |
Runs | 14 |
Runs residual | 0.0277272727273 |
Runs probability | 0.0359477124183 |
Amino acid sequence | MRPEYIIQAGKAFRILSGDFYSQQVPSLVSGGSDSLSAERVRNTLSGSQGSLFPSQGVPV CLPLEKEEGKELSLFLLSSAYIKAGLKN |
Secondary structure | LLHHHHHHHHHHHHHHLLLEELLLLLLLLLLLLLLHHHHHHHHHHLLLLLEELLLLLLEE ELLLLLLLLLEEEHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |