NONHSAT040224
Revision as of 21:48, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT040224 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1049 nt |
Genomic location |
chr14-:104337662..104346641 |
Exon number |
2 |
Exons |
104337662..104337749,104345681..104346641 |
Genome context |
|
Sequence |
000001 GTCGGAGATC ATTGTTCCCG GGCACAGGTC CCAAATTCCA GCCCACGACC GAAGGCCAAA CGTGCCCGTT AATGATTAAA 000080
000081 CCTCTGGAGT CAGTGCTCAG GGACACAGGC AGGGAGCAGC CCGGAGAGCT GCCGGTCAAG GTGCCCGGCC GGGTGGGGGT 000160 000161 GGGGCAGCAG CCAGGCCCCG CCCAACAGGA ACCAGTTCCT GCCCAAAGCA GGAGGGGAAA GGCTTTTCCA CCAAGGGAAA 000240 000241 GCTAAATATT GTCTAAATCC GGCACCCAGG ACGACACACA GGCTTCCCAT TGTCTGCCAC ACAGCAGGTC TCGGCCACGG 000320 000321 CCCAGGTTGC ACCCGTGTGA GGTCAGGGAG GGTGGAGCAT CCCGGGGAGG GGGCCTGCCC CCACCGTCTT CCTCTGCACC 000400 000401 GAGGCACATT CTTGGGAAAG GTCTTATGTT GCCAAAAGGG CTTAACCACA TGACACAAGT GAGCGTAGGT GGGCACCAGT 000480 000481 GAGGAAAAGC CATCCTTGGC AGCAGAAGCC GGTGCAGGGG CGACGCTTCA GACCACAGGA AGCGAGCTCT CCACGGTGGC 000560 000561 CGAGGGCTTT TCCACTCGGC GAgcctgggc accagtccca gctctgctac cttttcgctg tcgtaggtta tctcagtttc 000640 000641 ctcctctgta aaatgggaac gtggtacctg acctcaaggt caccaagagg tctaccgagt ggcccctgtg aaacacgtag 000720 000721 tgccggagcc ctggtacctg caagctctca ataCCCGGCG ATCACGTTCA TTACGATTAG GATCACCAGA TTCTGTTCCT 000800 000801 TTGCGAGATC CTTTCCAACT GCACTTTCAT GTCAGTGTTC GTTTGCAGGT TGATGTTGGA CCGTATTTAC ATTCAGTGTT 000880 000881 TGGGGCTGAC CGGGAAGAAA TCTGAAAGTG GAAGAGAAGG GAAGGCACCG GTAACCTCGT CTTCCCAAGA GGAGGTCAGA 000960 000961 GGGACTgatc tctgcttact gcagcctcca cctcccaggc tcaagagacc ctcctacctc agcctcccca gtatctggga 001040 001041 ctacaggcg |
Predicted Small Protein
Name | NONHSAT040224_smProtein_71:244 |
Length | 58 |
Molecular weight | 6140.9458 |
Aromaticity | 0.0175438596491 |
Instability index | 77.6245614035 |
Isoelectric point | 10.2366333008 |
Runs | 7 |
Runs residual | 0.0311403508772 |
Runs probability | 0.0287177934237 |
Amino acid sequence | MIKPLESVLRDTGREQPGELPVKVPGRVGVGQQPGPAQQEPVPAQSRRGKAFPPRES |
Secondary structure | LLLLHHHHHLLLLLLLLLLLLEELLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |