NONHSAT041651
Revision as of 21:53, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT041651 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1022 nt |
Genomic location |
chr15-:36718457..36720592 |
Exon number |
2 |
Exons |
36718457..36719013,36720128..36720592 |
Genome context |
|
Sequence |
000001 TTTCCCAGTC CCTGCTGGTT TCTCTGTGTG AATATTCACT CTAGCTCCTA TTGCCTGGCA GACTTACTCA TTATATCCTC 000080
000081 AATGGAAATT CCAGAGAGGG ACAACTGGAT TAGTCCAGTG ACTCATGGAG GAGCATCTGC TTTTGATGAA GTGCTTTCTC 000160 000161 TTCAGTCGGG CCAATCACGA TTGGGAGGCA GCGTCTTGAA CGGTGGAATA TGAGTAAGAA CTTCTACAGA AGAGGCCAGG 000240 000241 GCTTCCCAGA AGGGGGCTAT TCAGTAACAG Taattatcag caacctctat ttagcacttg agcacatatc taaatatttt 000320 000321 acatatgtga aaattcattt aattttcata acaTGCATAA TTTAATTGTT TTCATTTATT tgacaaatat atacagcgtt 000400 000401 gctctgtagc aggcactggt cttagtacct tacagatgtt gactccgttg ataaaaactt acgagTTAAG GAAAGACACT 000480 000481 ACCATTCAAA TAGACAAGCT ACATAAGACA GACTACGTAT ACACTGGAAT CAGAGTCTCC AATCAGAAAG GGATTTTGTG 000560 000561 TCTCTTTTCC TGTTAAGAAC CTGGTTTAGA CAGCTCTGCT ACCTATAAAC ATTTGCTCTA ATCAATTAGA GAAGGAGAGC 000640 000641 CTAAGAAATG GTCATGCAAA ATATTCGGAC AATGTCACAT GATGCCTGAA GACTGCTCTC ATTTTAACTG GGATAAAGAG 000720 000721 GACATTTCTC CATTCAAGAG CTGCTTCTGA TTGTTCTATG TTTCTGATGC ATTTTTACTA ACGCAATACA TAGGGTAATA 000800 000801 AGATACTCAT GTTACAGACA CATTATGTAA TAGTCTGTAT CGTTTATATC CTTATTTGTT TTCAGGAAAA TCAAGTTTTA 000880 000881 TTTTTACTTC TGTGAAACAA TGTCATTTCA ACTTATTTAT ACATATTCCT TTATCAGGAA ATAATTTTAT CCTGGATATC 000960 000961 CCTTTAATGT CTTGCAAAAT GTCTCCCCAT TCTTTTTCAT CTCTTAATAT ATTTTTCCCA CC |
Predicted Small Protein
Name | NONHSAT041651_smProtein_209:364 |
Length | 52 |
Molecular weight | 5945.9481 |
Aromaticity | 0.176470588235 |
Instability index | 41.7178431373 |
Isoelectric point | 9.30169677734 |
Runs | 8 |
Runs residual | 0.00262085032033 |
Runs probability | 0.049980127186 |
Amino acid sequence | MSKNFYRRGQGFPEGGYSVTVIISNLYLALEHISKYFTYVKIHLIFITCII |
Secondary structure | LLLLEELLLLLLLLLLEEEEEEEHHHHHHHHHHHHHLEEEEEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooo |