NONHSAT042114
Revision as of 21:55, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT042114 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1466 nt |
Genomic location |
chr15-:44036011..44039292 |
Exon number |
3 |
Exons |
44036011..44036766,44037220..44037365,44038729..44039292 |
Genome context |
|
Sequence |
000001 CGTCCGCTTC CACTACAAGG CTTTGGGATG CCTAGTCTGT AGACTGGAGG AGCATTAATA CTGACTCACG CAGAAAAGAT 000080
000081 ATAGCTACAT ATTGGACTGG GGGAAGGGGT GGCAAAACCC TCTGCAAATA GGAAGTGCCA CAAGAGCACC GAGATAAGGA 000160 000161 TGAGGCCCTG CGTGAGCGCA GCCTTCGGGT TTTCCTTGGG CCGATCAGCA CCGACTCCCC CGCTCTCGGC GAGGCGCCTC 000240 000241 CAGCTCCCGG GAATGAGAAA TGTGCCCGCC GCAGCAGGGG CCCACAGGAA TGAAGGGCCC CGGCGCTGCG TAGGCCCAAC 000320 000321 AGTTCCCCGC GCTCTCGCCC CCGGCCCAGC CCCGCCTTTC TTCCCCCGCC TCGGCAGAAT GGACTCACCA GGGGGCGAAG 000400 000401 AACTCGACGA GCATGAGGCC CGCAGAGCCC GTGTCGGAGA TGCGACTCTC GAAGTTGTCG TCCGTGAGTT CTAGCACGTC 000480 000481 GGAGGCAGCG GCGAGGCGGG CCGCGGCAAG AAGCAGCGCC ACACCCGGGA ACAGCGCTAG GCGGCGGAGG CGCATGGCGG 000560 000561 CGAGACATGG CCGCTTACCA ACAAGAAGGG CAGATGCAGC TTCCCCGAGC TGATGCCATT CGTTCACGTC TCATCGATAC 000640 000641 TTTCTCTCTC ATCGAGCATT TGCAAGGCTT GAGCCAAGCT GTGCTGCGAC ACACTATCAG GAGTTACTTG ATCCTTCCCG 000720 000721 CCAGAAGAAA CTTATGTTGG GAGATCAACA CCAGCTAGTG GGCGTCTCTA TAAAGCCTCA ACGTATAGAA CAGATTTCAC 000800 000801 ATGCCCAGAG GCTGTTGAGC AGGCTTCATG TGCGCTGCAG TCAGAGGCCA CCTCTTTCTT TGTGGGCCGG ATGGGTCCTT 000880 000881 GAGTGTATCC TTTCATGTCA CTCATTTTTA TCCTGGCTGT TGATCATCTG CCTAATGACT TATTTTTTGC TTCCCAAACT 000960 000961 CCATTGTCTC ATTCTCACTG CTTATGTTAT TGCTCTTATT ATTTCAGCTG CATAAATCAG AAAGAACTCC ACTCTGTATG 001040 001041 TTTCCTTAAG AGACAACAGG TCCTCTCTTC AAAAACTTCA TCATCTTCCT GATCTTTTTG AATACGATCG TACTGATGGT 001120 001121 TGAAATACGT GAGAACTGAC ATTGTATGAA AGAGGAAGTG Aggccaggcg cggcggctca cacgtgtaat cctagcactg 001200 001201 tgggaggccg aggcaggcgg attgccaaag ctcaggagtt caagaccagc ctgggcaaca tggtgaaacc ctgtttctac 001280 001281 taaaaaatac aaaaaattag ctgggcgtgg tggcatggcc tgtagtccca gctactcggg aggctgaggc aggagaatcg 001360 001361 cttgaaccca ggaggcgtag gtttcagtga gctgagattg tgccactgca tttcagcctg ggcgacagag tacaactctg 001440 001441 tctcaaaaaa aaaaaaaaaa gaaaaa |
Predicted Small Protein
Name | NONHSAT042114_smProtein_566:757 |
Length | 64 |
Molecular weight | 7295.3496 |
Aromaticity | 0.0634920634921 |
Instability index | 78.426984127 |
Isoelectric point | 9.29437255859 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0376258611552 |
Amino acid sequence | MAAYQQEGQMQLPRADAIRSRLIDTFSLIEHLQGLSQAVLRHTIRSYLILPARRNLCWEI NTS |
Secondary structure | LLHHHHHHLLLLLLHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHH LLL |
PRMN | - |
PiMo | - |