NONHSAT042350
Revision as of 21:56, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT042350 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1437 nt |
Genomic location |
chr15-:49017335..49022041 |
Exon number |
2 |
Exons |
49017335..49018009,49021280..49022041 |
Genome context |
|
Sequence |
000001 AAAATAAACA CCTATATACC CTGCATTTAG ATTTACCAAT TGTTTACTTT CTACATTTGT TTTATATTTG TCTGTAAATA 000080
000081 TACATATGTA TGCATGTACA TAGTATGTAC ATGTATATAA AAACATTTTT CCTTAACCAT GAAGATTATT TGCAGACACC 000160 000161 CTGAGTATTC CTTCCTAAAT ACTTCAGCAT ACATTTTCTA AGAACAAAAA CATTTTATTT CTTAAATACA ATTGTCATAT 000240 000241 TTAGGACATT GAATATTGAT AAATATTTAT ATACATATAC ACTTAAAAAA TTTTTTTTAT TTAGGAGATG GGATCTTGCT 000320 000321 CTGTCACCCA GGCTGGAGAG CAGTTGCTCA AATCACTGCA ACTGAACCGA GACTTCAACT GTTGGGTTCA AATGATCCTC 000400 000401 CCCGCTCAGC CTCTTGAATA GCTGGGACTA CAGGTACACA GCACTGCACT TGGCTAATTT TTAAATATTT TTGTAGACAC 000480 000481 AGTGTCTCGC TATGTTGCCT GGGCTGGTCT CAAACTCCTG GGCTCAAGCA ATCCTCCCAC CTTAGCCTTC GAAAGTGTTG 000560 000561 AGATTACAGG CGTGAGCCAC TGTGCCCAGC CAACATACAT ACATTCTATA TTCAAATTGC CCTAATTGTG ACAATAATGT 000640 000641 GTTATAACTT TTTTTTAGAT CTTTGCTGTT CACCTTCAAG CTGAGGACTT ACCACTTTTC TTCGATTATG AAAAATGCTC 000720 000721 AGCCAATAGC TATTCATTAA ACAAATATTT ATGAGGTGTC AATCAATATC TTGGATAAAG AAATCTTCCT TCTTAGAAAG 000800 000801 TGTACGATTC CCAAACGTTT TACAAGAATG GCTTCTTGCA TGGTAGAGAT CTCCATCAAG CCAAAGGGCA AATTCTCCTC 000880 000881 CTCCACCACC GAAAGCTAGT GAATCCATGT CTCCTTTGAT AAAAAACATG TTATCTCCTG TCCACTTAAA GACCTCAAAC 000960 000961 TCTGGACAGA ATGTAAAAAC AAAGGTCTCT CCAGTACCAT AAAAGCCATC ACTCACTTTA AATGGCTCAG CTGCTAACGC 001040 001041 ACCAAAAACC TGTCCATCAC TGTCTTTAAT TACCATCAGC ACTGGGGTGT CTAAACCTGT CATTGTTCGA TAAAGAGTTT 001120 001121 TCAAGCAAGC TTGTGCCATG TTTTCCAGTA CCATAAACAA GAGTCCGTGG ATAGCCAATT GTTCTTGGTG GAAGATGCTT 001200 001201 GGTAAGCTTT TCAATTTGAT CTGGCAGTAA ACTTTTCATT TGAGAATAGG TTTAGGTTTA CCAAAAAGTT GCAAAGATAT 001280 001281 ACAGAGTCTC TATACCTCTC ACCCAGACTC CTCTGTTGTT AATGTCTTAC ATCACTATGG TAACTTTTTC ACAACTAAGG 001360 001361 AACCAACATT ACATTTAAAT ATAGATGTAT TTTTTTTTTC TTGTGACGCT AGAGGCCATG GCTTTAATCC CTATACT |
Predicted Small Protein
Name | NONHSAT042350_smProtein_89:163 |
Length | 25 |
Molecular weight | 3046.498 |
Aromaticity | 0.208333333333 |
Instability index | 94.7041666667 |
Isoelectric point | 6.20880126953 |
Runs | 6 |
Runs residual | 0.014880952381 |
Runs probability | 0.0233174350822 |
Amino acid sequence | MHVHSMYMYIKTFFLNHEDYLQTP |
Secondary structure | LEEHHHHHHHHHHHLLLHHHLLLL |
PRMN | - |
PiMo | - |