NONHSAT046867
Revision as of 22:00, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT046867 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1808 nt |
Genomic location |
chr15-:67833125..67834932 |
Exon number |
1 |
Exons |
67833125..67834932 |
Genome context |
|
Sequence |
000001 CCGGGAGGAT GCGCCCCCGG CGTGGGAAGC CGAGGAAccg gcgcgcggcg cgcggcgcgT GGCGCGTGGC GAGTCGGGGA 000080
000081 GAGACTGGTC TTGCTCGCTC AGGAGACCCT CATCGCCCAC AGAGCGCCCG CGGCGACCCG GTCACGGCCC TTCCATTTCC 000160 000161 TGACCCTGCT TAATGACAGC GAGGTGAAAA CATCTACCAA ACGAAGGGTA AAAGGCTGGA GTCCGCCAAA AGCCAATTTA 000240 000241 AGGCTTAACA TTGCAGACCG TTTGTCTTTA CAAAAGCTTC AAAGACGGGG CTGCAGCTCC CGGTTATCCC CACTTTGTCA 000320 000321 AGCCATGAAT CTGAATGTTC GTGGGGTTGT GTGCATCGAA TCAGCAAGAG CAAGGCAAGA ATTCAAGAAA TAGTTCTTTT 000400 000401 TTATCCCCCC TTCCAAGTCA CAGGTTCAGA GGATCATCAT CTTTCTCCCA CATTAGCAAA ACATATTTGC ATTTTTCAGT 000480 000481 GAAGTTCTTT ACCGCACGAG TGCCCTAAAA TAGCAAACAG TTCCCTGTTC AAAAGCAATA GTAAAGAAAT TCGCCGAAGA 000560 000561 GTTTAATTGC CTGGGGACAG CTGCAGTAGT CGCATCATCG TCTCTTATTA AACTGTTGCA GAAATATTCG GTCTAGTCCA 000640 000641 TGTATTTTCA ACTAAATAGC ACTGCTTACG CAGTTGGTGA TATGGTGATA TCACGGAAGT AGCAATAAAC CTTGGTTATC 000720 000721 tttttttttt ttttttttga gacggagtct cgctccgtcg cccaggctgg agtgcaacgg cgcgacctct actcaccaca 000800 000801 acctcagcct cccggattca agcgattctc ctgcctcagc actaccaccc ccaccagccc ccaacccctg ccgagtaact 000880 000881 gggactacag gcgtgcgcca tccgtgcccg ctcatttttg tattttcagt agagactggg tttcactatg ttggccaggc 000960 000961 tggtctcaaa ctcctgacct cgtgatccgc ccacctcagc ctcccaaagt gctgggggga ttacaggtgt gagccaccgc 001040 001041 gcccggccAA CCTTGGTTAT CTTCAAATGC CTTGTTACCT CAGATTTTAA AGTGCATAAG GTTGTAGAAC GATGGTGCCT 001120 001121 CTACAGAAGT TTCTTTACAA ATTGTAATGT GTAGGTTCGT CCTTTATTTC TTTCTTATGA AGGTGCACGA ATTGGCTTTA 001200 001201 CTTTCTGGGG TTGAATTTTG TATAAACTCG GTTGAGGAGG CTTGTCAGTT TCCCTTCTAA CAGTAAGGTG CTTGATTAAT 001280 001281 GTGAGAGAAA AAAATTAATG TTGGTCATTT TCAGTTACAA TACCAAAATT TTTTCTGCAT ACTTTACTCT GAGTTACTTT 001360 001361 TATATTTAAT TTGAAAGGCC ATTGTAGGAG ATAAATTATC ACATTTTAAG TTACTGTAAA TCAATAGCTT AGGTAGAAAT 001440 001441 TCATTTAGTC AGATCCTTCA GATATTCTAG GAATTTCCCC TTTTCACCTG CACTTCACTT CTGTGAAAAA TAAACCGTTC 001520 001521 ATCAAAAGTC CTCATGTACT TTTATTAAAA GTTCATTTCC TATTATTTTA GAAAATAGAC CACGAAACTA GAGATTTTCT 001600 001601 ATGAACCTGT GATTTGTTAA AATGTCTCTT TTATTCGAAG TACCGTGGGG AAAACCAACT CAATTTGCCA AATTTGCATA 001680 001681 CATATTCTGA AGCTTTTCTT ACACTAATGG CAAACTCATA TTTCTGTTCC AATATTTGCA GAGCCAATAT AATTACACGT 001760 001761 CAGCTCTTCA TAGCCTTTAT GTAGTAAGAA ATCTTAACTT TGATGATT |
Predicted Small Protein
Name | NONHSAT046867_smProtein_8:172 |
Length | 55 |
Molecular weight | 5914.6125 |
Aromaticity | 0.037037037037 |
Instability index | 60.7333333333 |
Isoelectric point | 12.1471557617 |
Runs | 9 |
Runs residual | 0.00397470641373 |
Runs probability | 0.0385777934798 |
Amino acid sequence | MRPRRGKPRNRRAARGAWRVASRGETGLARSGDPHRPQSARGDPVTALPFPDPA |
Secondary structure | LLLLLLLLLLHHHHHLLEEEELLLLLLEELLLLLLLLLLLLLLLEELLLLLLLL |
PRMN | - |
PiMo | - |