NONHSAT047096

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT047096

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

5034 nt

Genomic location

chr15-:72761633..72766666

Exon number

1

Exons

72761633..72766666

Genome context

Sequence
000001 CAACAAAGGG GCGTGCGTCA CCGCGTCGCG CTGCGTCGTC GCGTCACTCC TCTTTGCGTC ACTGCGCCCC GCCCCACCGC 000080
000081 CCCTGCGTGG AGCCCGGGGA GACCCCACGG CCCGGCCTTC CTGGGCCTGG GACCCGAGGG GAGCCGAGCG GGAATTGCTT 000160
000161 TCCTGGTTCG ATCCGCTGCC GCTGTGAGGG CCGAGCGGAA ACCCGTAGAC CTTTTATGTG AAGAGATTGC GGCCTCCTGG 000240
000241 TCACCAGTCA CCGAGAGAGG GACCCCTGGA CCGCCTACGT GGTGGTGTCT GCCGCAGGCC ATAGGGATCC AGCCCACTTA 000320
000321 GGCAGTCCCT TGGGGACGCG GCCTTCCCTC CGGAGCGGAA AGGCGCTTCC CGCCCGCCCT GCGGTAATCC CGGAAGCCCT 000400
000401 CAGCCGTTAA GCTAAAATTT CTGTTGCTTT GGCTACTGAT GGAAACCTGT TGTAAGTGGA ACCTCTAAAC TGTATGACAG 000480
000481 GTGAACCCAC TTTAGGTAGC TGTGTGATTC TGTCCACTTG TACAGACGTG CAGTGGTTTT TAAGTCTCCT ATAATGACGT 000560
000561 CATTTTAAAG AGGCATTTCC TCCACCCCGC TGACAAGAGC GCCTCTTGAG GGCCCTAAAC AATGTAAACA GCGATGATTT 000640
000641 TCATGAATTG Agcactgtgt aagggcttta catatattct gtctcatctt cacggagcca tagtacccat tttatacctg 000720
000721 aggaacctga agctcagaaa ggaaaaggga cctggccaag accacataac CCTTGCCCTA TTTTAACCGC TGGATGCCCC 000800
000801 AAAACATGAA TCATAAAAAT GCTTTGTAAT GTAGATATAT TATGTACTAT GTAGTACATA AAAGACATGA ATGCTTCAAC 000880
000881 AAAATACAGG CAATAATAGA AATATCTACA AGGGCCAAAT GTAGCCAGAG AGATAATGCT TGAATCTCAT ctgaaagtgt 000960
000961 gctatgtgag ctgagtgttg atgaatggct aggagttcaa cagagaaggt agggaagatg gtctagccgc agagaacaag 001040
001041 caaaagcgca gaaggtgtca agtaagtaat agtttgggga gcttaaagtg catggagggt acatggcaaa atattaggca 001120
001121 agttagtcag gggtcaTGTC AGTTAAGAGC ATTTTATGCC TAAGAGTGGG CTTAAATCTT TGCAAACAGG ACATGCGAGC 001200
001201 CAGAGAAGTG TTATGAAGGA AGAAGAGGCA TAAGAAGGCT CCCTCTTGAG ATAATCTGAA GAATTGGCCA GATTGAAAAC 001280
001281 CTTTTAAAAT CAAAACCCCT GATTTGTTGA TAAATCTTAC TGTTCAACCT ATAGGTTCCC TTTGGAAATT GATTTTGAAA 001360
001361 AGTGAAAAAT TCCATTATAA TGTTAAAAAG CCTCTTCCAA TTTGTCCATT TTGTAAGTTT TAAAATACCG ATAATTATAT 001440
001441 TTCTTAACCT CAGGATTTAC AAAGTAAAGC ATTTAACCTC AATACTGGTA GTCTAGgttt ttgttgttgt tgttgttgtt 001520
001521 TGtttttttc ttgagacgga gtctcgctct gttgcccaga ttggagtaca gtggtgatct cagctcactg cagcctctgc 001600
001601 ctcccaggtt caagcgattc tcctgtctca gcctcctgag tagctgggac tacaggcgca tgccaccacc ccaggctaat 001680
001681 ttttgtattt ttagtagaga tggggtttca ccatattggc caggctggtc tcgaattcct gacttcaggt gatccacctg 001760
001761 cctcggcctc ccaaagtgct gtgataacag gcataagcca cagcgcccag ccAGGTCTAG GTTCTTTGAT TCAGTGTTTC 001840
001841 TATTTAGCAA TTCTAGATTG CTGCCACAAC TAAGGCAAGC CATGGACACA AGGAACACTT CTGTCCACCC CGTCTCCATT 001920
001921 GTGATATTAC CTACAGAAAA ATTCAGTAAC ACTCGTCAGt accctaaact cctttgcctc acctttcttt tcattgtacc 002000
002001 cctatcttga atgaacccta ccatccatag tctccacttt gataaatgga gcagctgacc actattagag aaatgtgcat 002080
002081 agccatctgt attctattac tacatttctt cttttttttt ttttttttgg agacactctt gctctggcac ccaggctgga 002160
002161 atgcagtggt gcgatcacca ctgaaggctc aatgtcccgg gctcaagtga tcctcccact tcagcctcct gagttgctgg 002240
002241 tactacaggt gcacaccacc atacctggct aattttttat ttttttttac agatacatct cactatgttg ctcagactgg 002320
002321 tctggaactc ctggcctcaa gcaatcctcc caccttggcc tcccaaaatg ctaggattac aggtgtgagc cactacaccc 002400
002401 agcctactta atttcaatca ccaagcacaa ctcaaccttc aataattccc agcaatccta ttaaattttt ctggattgtt 002480
002481 ctcccactct cgacaactct ttcacacctt tgcagtttcc tcaaacttca gccctgccct ttcacatctt ctcaaaacat 002560
002561 gtgactttta gtcacagagg aatttgaaaa tatcaggacc aatgtgactt gagacatgct gagcaaagaa gagggtgtta 002640
002641 agggataaag tcagagaaag cagatcaagg tagggggcca gtaggggcct tgtaggtcat cttaagaagt ttacattatt 002720
002721 ccagtggcaa ttattaacga gttttaagca gaagagtgaa actatatgat ctgtgttttt aaaaagataa ctgactgctt 002800
002801 tatggtgaat ggactacgaa aacaaagcaa ttatgaggct atctcagtag tccaggtaag tagataatag cctgaactag 002880
002881 ggttgtggca gtggaggtga taagaagtgg tcagattgag atagaatttg aaagaagagc caaaatattt gctggtggct 002960
002961 tgacagtggg tttgatggag gaaacaagga tgcctactgt atttggagct tgagcgactg ggtgaatggt ggcatcactc 003040
003041 actgaaacat gttatttgag gtgctcgtta gacatcaggg tagaggtgtt gagtaggcag ttccataaac taagatacaa 003120
003121 gactgaaggt caggaaaaat tagagctgga gatacaattt taccagagtt tacaccagca ATGTTTagaa gcggcatagg 003200
003201 ataaaggtga agaggataaa agttattgaa gcagatggat ctgaatttgc ctatgcaccc ccctgccccg ttgctgtctg 003280
003281 taaccttaag caaattacta agcctctctt ttagaggttt actttggagg atcataattc ctgttctcat aggattattt 003360
003361 gtgagtatca aatgaaatta tgtatttaaa gcatttgaca cagtacctgg cacatagcta agtactcaca aaatcagagc 003440
003441 tttTAAAAAG TGTCATAAGT CACCTTTATA ATCTTTTAAT CAGTtttgtt tatttgtttg tttgtttgtt ttgagacgga 003520
003521 gtctcactct gtcgcccagg ctggagcaca gtggagcaat ttcggctcac tgcaacctct gcctcccggg ttcaggcaat 003600
003601 tctcctacct caacctcctg agtagctggg actacaggca cgcaccacca tgcctggcta atttttgtat ttttagtaga 003680
003681 gacgggtttt accatgttgg caggctggtc tcgacctcct gacctcatga tcctcccacc tcggccaccc aaagtgctgg 003760
003761 gattatagtc gtgagccacc acacccagcc TAATCAGTTT TATTTTAATT ATGCTTATAT GTACACAGCC TGTGTCATCC 003840
003841 CCATTTTCTA GGGAAGAAAA TTGGTCTGAT TTTTTTCTCA GAAACCTTTT CCATGATCTC ATGACTTCAT TTTTTATTAA 003920
003921 TATCATGAAA AGTATTACAG TGCTTCTGAA TTTCTGGGTC TCCTATCCAT GGATAAACCA TTATAACCAT GGTTTGATGG 004000
004001 TTAATTAGCT TTCATTCTAT ACATATTTTT ATAGAATTAA TTAGTTAACA TTCGTTCTAT ACATATTTTG GAAACCATCT 004080
004081 TAGATTCAGG TTAGGTTATG GTGCTATTTA AGGAAAACCA GTAGAACAAC TTCTCTCTGG CCCCACATTG GCCAAGGGAT 004160
004161 GACCCACATA CATTATTTTG TATTGTTTTT TAATGACTTG TTCTTAAAGG TATTGCCTGT GTTATTGTTT TCCCAGCGAT 004240
004241 GGTGATTACT AGCTAGAAGC ACAGTAGTCT CTAAACAACA ACAGGAAAAG GTTCTTGAAA AAGAAAATAC ACAAATTAAT 004320
004321 ACCTTTTTGG TGCCGAGATA ATCATTGTTG GTAATTTGGC ACTCCCATTG TCCCCAAGTC CTAGTAAGGT AAAAAAATAT 004400
004401 TCGTATACAT TTATAAAATA TCTACTCATG GGACAAAATT CCATAAATAT TTATATGCTA ACCAAATGAT TATGTACTGA 004480
004481 ATACCAACAG GAAGACTATG CAGGTGCTTT TCAGATAAAT ATAAATTACA GTAGCACTGG AATTTTTCTA AGGGCAGATA 004560
004561 ATAGAAGTGT AAGCTATGGA AAAGCCAACT GTaccaactg ttccagttgg ctcaggacag gggtttcctg ggacatggag 004640
004641 ttttcagtac ccaaactggg aagtcccagg caagctggga tggtttggtc accctaCAGG GCATCTGACC AAAAATTCTT 004720
004721 ATATGTAAGC AATTGTCTCT AAAATCAAGT GAGAAGAAAT TGCTTTTTGT CATTTTGTTT ATAAAATCAG TTTTAATGCA 004800
004801 GCACTttttg tttttgtttg ttttgttttg tctttttttg GTGGGGGGGG GGTGgaaaca aagtctcact ctattgccca 004880
004881 agctggagtg cactggcatg atctcggccc actgcaacct ctgcctccca gttcaagtga ttcttctgtc tgagccttcc 004960
004961 gcatagctgg gattacaggc atgcgccact acgcccggcc aattttttgt attcttagta gagatggggt ttca
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Predicted Small Protein

Name NONHSAT047096_smProtein_2045:2209
Length 55
Molecular weight 6384.7093
Aromaticity 0.166666666667
Instability index 43.1351851852
Isoelectric point 7.76995849609
Runs 7
Runs residual 0.0330623306233
Runs probability 0.0156963686375
Amino acid sequence MEQLTTIREMCIAICILLLHFFFFFFFLETLLLWHPGWNAVVRSPLKAQCPGLK
Secondary structure LLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLEEELLHHHLLLLLL
PRMN LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii