NONHSAT047096
Revision as of 22:01, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047096 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
5034 nt |
Genomic location |
chr15-:72761633..72766666 |
Exon number |
1 |
Exons |
72761633..72766666 |
Genome context |
|
Sequence |
000001 CAACAAAGGG GCGTGCGTCA CCGCGTCGCG CTGCGTCGTC GCGTCACTCC TCTTTGCGTC ACTGCGCCCC GCCCCACCGC 000080
000081 CCCTGCGTGG AGCCCGGGGA GACCCCACGG CCCGGCCTTC CTGGGCCTGG GACCCGAGGG GAGCCGAGCG GGAATTGCTT 000160 000161 TCCTGGTTCG ATCCGCTGCC GCTGTGAGGG CCGAGCGGAA ACCCGTAGAC CTTTTATGTG AAGAGATTGC GGCCTCCTGG 000240 000241 TCACCAGTCA CCGAGAGAGG GACCCCTGGA CCGCCTACGT GGTGGTGTCT GCCGCAGGCC ATAGGGATCC AGCCCACTTA 000320 000321 GGCAGTCCCT TGGGGACGCG GCCTTCCCTC CGGAGCGGAA AGGCGCTTCC CGCCCGCCCT GCGGTAATCC CGGAAGCCCT 000400 000401 CAGCCGTTAA GCTAAAATTT CTGTTGCTTT GGCTACTGAT GGAAACCTGT TGTAAGTGGA ACCTCTAAAC TGTATGACAG 000480 000481 GTGAACCCAC TTTAGGTAGC TGTGTGATTC TGTCCACTTG TACAGACGTG CAGTGGTTTT TAAGTCTCCT ATAATGACGT 000560 000561 CATTTTAAAG AGGCATTTCC TCCACCCCGC TGACAAGAGC GCCTCTTGAG GGCCCTAAAC AATGTAAACA GCGATGATTT 000640 000641 TCATGAATTG Agcactgtgt aagggcttta catatattct gtctcatctt cacggagcca tagtacccat tttatacctg 000720 000721 aggaacctga agctcagaaa ggaaaaggga cctggccaag accacataac CCTTGCCCTA TTTTAACCGC TGGATGCCCC 000800 000801 AAAACATGAA TCATAAAAAT GCTTTGTAAT GTAGATATAT TATGTACTAT GTAGTACATA AAAGACATGA ATGCTTCAAC 000880 000881 AAAATACAGG CAATAATAGA AATATCTACA AGGGCCAAAT GTAGCCAGAG AGATAATGCT TGAATCTCAT ctgaaagtgt 000960 000961 gctatgtgag ctgagtgttg atgaatggct aggagttcaa cagagaaggt agggaagatg gtctagccgc agagaacaag 001040 001041 caaaagcgca gaaggtgtca agtaagtaat agtttgggga gcttaaagtg catggagggt acatggcaaa atattaggca 001120 001121 agttagtcag gggtcaTGTC AGTTAAGAGC ATTTTATGCC TAAGAGTGGG CTTAAATCTT TGCAAACAGG ACATGCGAGC 001200 001201 CAGAGAAGTG TTATGAAGGA AGAAGAGGCA TAAGAAGGCT CCCTCTTGAG ATAATCTGAA GAATTGGCCA GATTGAAAAC 001280 001281 CTTTTAAAAT CAAAACCCCT GATTTGTTGA TAAATCTTAC TGTTCAACCT ATAGGTTCCC TTTGGAAATT GATTTTGAAA 001360 001361 AGTGAAAAAT TCCATTATAA TGTTAAAAAG CCTCTTCCAA TTTGTCCATT TTGTAAGTTT TAAAATACCG ATAATTATAT 001440 001441 TTCTTAACCT CAGGATTTAC AAAGTAAAGC ATTTAACCTC AATACTGGTA GTCTAGgttt ttgttgttgt tgttgttgtt 001520 001521 TGtttttttc ttgagacgga gtctcgctct gttgcccaga ttggagtaca gtggtgatct cagctcactg cagcctctgc 001600 001601 ctcccaggtt caagcgattc tcctgtctca gcctcctgag tagctgggac tacaggcgca tgccaccacc ccaggctaat 001680 001681 ttttgtattt ttagtagaga tggggtttca ccatattggc caggctggtc tcgaattcct gacttcaggt gatccacctg 001760 001761 cctcggcctc ccaaagtgct gtgataacag gcataagcca cagcgcccag ccAGGTCTAG GTTCTTTGAT TCAGTGTTTC 001840 001841 TATTTAGCAA TTCTAGATTG CTGCCACAAC TAAGGCAAGC CATGGACACA AGGAACACTT CTGTCCACCC CGTCTCCATT 001920 001921 GTGATATTAC CTACAGAAAA ATTCAGTAAC ACTCGTCAGt accctaaact cctttgcctc acctttcttt tcattgtacc 002000 002001 cctatcttga atgaacccta ccatccatag tctccacttt gataaatgga gcagctgacc actattagag aaatgtgcat 002080 002081 agccatctgt attctattac tacatttctt cttttttttt ttttttttgg agacactctt gctctggcac ccaggctgga 002160 002161 atgcagtggt gcgatcacca ctgaaggctc aatgtcccgg gctcaagtga tcctcccact tcagcctcct gagttgctgg 002240 002241 tactacaggt gcacaccacc atacctggct aattttttat ttttttttac agatacatct cactatgttg ctcagactgg 002320 002321 tctggaactc ctggcctcaa gcaatcctcc caccttggcc tcccaaaatg ctaggattac aggtgtgagc cactacaccc 002400 002401 agcctactta atttcaatca ccaagcacaa ctcaaccttc aataattccc agcaatccta ttaaattttt ctggattgtt 002480 002481 ctcccactct cgacaactct ttcacacctt tgcagtttcc tcaaacttca gccctgccct ttcacatctt ctcaaaacat 002560 002561 gtgactttta gtcacagagg aatttgaaaa tatcaggacc aatgtgactt gagacatgct gagcaaagaa gagggtgtta 002640 002641 agggataaag tcagagaaag cagatcaagg tagggggcca gtaggggcct tgtaggtcat cttaagaagt ttacattatt 002720 002721 ccagtggcaa ttattaacga gttttaagca gaagagtgaa actatatgat ctgtgttttt aaaaagataa ctgactgctt 002800 002801 tatggtgaat ggactacgaa aacaaagcaa ttatgaggct atctcagtag tccaggtaag tagataatag cctgaactag 002880 002881 ggttgtggca gtggaggtga taagaagtgg tcagattgag atagaatttg aaagaagagc caaaatattt gctggtggct 002960 002961 tgacagtggg tttgatggag gaaacaagga tgcctactgt atttggagct tgagcgactg ggtgaatggt ggcatcactc 003040 003041 actgaaacat gttatttgag gtgctcgtta gacatcaggg tagaggtgtt gagtaggcag ttccataaac taagatacaa 003120 003121 gactgaaggt caggaaaaat tagagctgga gatacaattt taccagagtt tacaccagca ATGTTTagaa gcggcatagg 003200 003201 ataaaggtga agaggataaa agttattgaa gcagatggat ctgaatttgc ctatgcaccc ccctgccccg ttgctgtctg 003280 003281 taaccttaag caaattacta agcctctctt ttagaggttt actttggagg atcataattc ctgttctcat aggattattt 003360 003361 gtgagtatca aatgaaatta tgtatttaaa gcatttgaca cagtacctgg cacatagcta agtactcaca aaatcagagc 003440 003441 tttTAAAAAG TGTCATAAGT CACCTTTATA ATCTTTTAAT CAGTtttgtt tatttgtttg tttgtttgtt ttgagacgga 003520 003521 gtctcactct gtcgcccagg ctggagcaca gtggagcaat ttcggctcac tgcaacctct gcctcccggg ttcaggcaat 003600 003601 tctcctacct caacctcctg agtagctggg actacaggca cgcaccacca tgcctggcta atttttgtat ttttagtaga 003680 003681 gacgggtttt accatgttgg caggctggtc tcgacctcct gacctcatga tcctcccacc tcggccaccc aaagtgctgg 003760 003761 gattatagtc gtgagccacc acacccagcc TAATCAGTTT TATTTTAATT ATGCTTATAT GTACACAGCC TGTGTCATCC 003840 003841 CCATTTTCTA GGGAAGAAAA TTGGTCTGAT TTTTTTCTCA GAAACCTTTT CCATGATCTC ATGACTTCAT TTTTTATTAA 003920 003921 TATCATGAAA AGTATTACAG TGCTTCTGAA TTTCTGGGTC TCCTATCCAT GGATAAACCA TTATAACCAT GGTTTGATGG 004000 004001 TTAATTAGCT TTCATTCTAT ACATATTTTT ATAGAATTAA TTAGTTAACA TTCGTTCTAT ACATATTTTG GAAACCATCT 004080 004081 TAGATTCAGG TTAGGTTATG GTGCTATTTA AGGAAAACCA GTAGAACAAC TTCTCTCTGG CCCCACATTG GCCAAGGGAT 004160 004161 GACCCACATA CATTATTTTG TATTGTTTTT TAATGACTTG TTCTTAAAGG TATTGCCTGT GTTATTGTTT TCCCAGCGAT 004240 004241 GGTGATTACT AGCTAGAAGC ACAGTAGTCT CTAAACAACA ACAGGAAAAG GTTCTTGAAA AAGAAAATAC ACAAATTAAT 004320 004321 ACCTTTTTGG TGCCGAGATA ATCATTGTTG GTAATTTGGC ACTCCCATTG TCCCCAAGTC CTAGTAAGGT AAAAAAATAT 004400 004401 TCGTATACAT TTATAAAATA TCTACTCATG GGACAAAATT CCATAAATAT TTATATGCTA ACCAAATGAT TATGTACTGA 004480 004481 ATACCAACAG GAAGACTATG CAGGTGCTTT TCAGATAAAT ATAAATTACA GTAGCACTGG AATTTTTCTA AGGGCAGATA 004560 004561 ATAGAAGTGT AAGCTATGGA AAAGCCAACT GTaccaactg ttccagttgg ctcaggacag gggtttcctg ggacatggag 004640 004641 ttttcagtac ccaaactggg aagtcccagg caagctggga tggtttggtc accctaCAGG GCATCTGACC AAAAATTCTT 004720 004721 ATATGTAAGC AATTGTCTCT AAAATCAAGT GAGAAGAAAT TGCTTTTTGT CATTTTGTTT ATAAAATCAG TTTTAATGCA 004800 004801 GCACTttttg tttttgtttg ttttgttttg tctttttttg GTGGGGGGGG GGTGgaaaca aagtctcact ctattgccca 004880 004881 agctggagtg cactggcatg atctcggccc actgcaacct ctgcctccca gttcaagtga ttcttctgtc tgagccttcc 004960 004961 gcatagctgg gattacaggc atgcgccact acgcccggcc aattttttgt attcttagta gagatggggt ttca |
Predicted Small Protein
Name | NONHSAT047096_smProtein_2045:2209 |
Length | 55 |
Molecular weight | 6384.7093 |
Aromaticity | 0.166666666667 |
Instability index | 43.1351851852 |
Isoelectric point | 7.76995849609 |
Runs | 7 |
Runs residual | 0.0330623306233 |
Runs probability | 0.0156963686375 |
Amino acid sequence | MEQLTTIREMCIAICILLLHFFFFFFFLETLLLWHPGWNAVVRSPLKAQCPGLK |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLEEELLHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii |