NONHSAT047254
Revision as of 22:02, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047254 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1013 nt |
Genomic location |
chr15-:74892773..74894587 |
Exon number |
2 |
Exons |
74892773..74893416,74894219..74894587 |
Genome context |
|
Sequence |
000001 GGGGGGCAGG GGCATTTAGG GACACGTTGT GGAGGCTGCC CTCTCATCCC CTCAGGGGTT AGGATGGGTG GGGCTGAGCA 000080
000081 GCGGCCTGAG GCCTGACCTA TCTCCTGGTC TGCCTTCTTC TCTCTGAAGA GGGGAAGCCA GGGAAAGCAG CAGCAGGAGG 000160 000161 GTGGGCTGTG GGGCACAGGG AATCAGACCA TCTGGGCCCC TGGGCCTGGA GCAATGGAtg gaaggagaat ggcagtagaa 000240 000241 ccgagaagtc ttacacttca ctctccacca ctccccagct tggcgagcat gagcaagtcc tgccttcact aagcctcact 000320 000321 atcctctgta aaatggaaac acggacagta cctatgacac aggattgatG GAGTGGGAGC TGCTGCAGGT CTGAGCACCA 000400 000401 AGGGCTCCAG CACCAGGACA GGAGCCTCCA GCCACCTCCA CCTTGCAGCC CCTGAAGGTA GCATATGTGG ACCCTCTAGA 000480 000481 TGGGGTGGGG Agtgacctct gcccagttcc tttctgtccc gtggccttcc catctgcagg ttgtagaggg gaaacagaag 000560 000561 gctagaaagg cccttccagc tcaggctttt actggttcta AATGGATTCC TGAGCTGGCC TCCCCATCCC TGGACAGAGC 000640 000641 GGAAGCTACC CCCTGCCCTG CCTCTCTGAC CCCCATGGTA TCAGCCTCTG TCTCATCTGC CCCCAGATCC CAGCCATGGC 000720 000721 CCTGGAGCCC AAAGAAGGGC ATCTGAGAAA AGTTGGAAGC CAGGGGCAGT GCCCAGGCAG TGTAGAGACT GTGCCCAGAG 000800 000801 CCAGCAGGAG GCAGATTCAC AGCCTCACTC TGCAGCACAA GAGATTGAGG TCAGGCCCTG CACCCCCGCC CAGTGAGCTG 000880 000881 AAGGGTCCTG GCATAGAAAA GCTGAATTGA GAGGCCTCAG TGAGTTgggc atggtggctc acacctgcaa tcccagcact 000960 000961 ttaggaggct gaggcaggtg gatcacttga ggccaggagt tcaagaacag cct |
Predicted Small Protein
Name | NONHSAT047254_smProtein_479:745 |
Length | 89 |
Molecular weight | 9395.716 |
Aromaticity | 0.0795454545455 |
Instability index | 46.2568181818 |
Isoelectric point | 10.016784668 |
Runs | 9 |
Runs residual | 0.0290909090909 |
Runs probability | 0.0323755127677 |
Amino acid sequence | MGWGVTSAQFLSVPWPSHLQVVEGKQKARKALPAQAFTGSKWIPELASPSLDRAEATPCP ASLTPMVSASVSSAPRSQPWPWSPKKGI |
Secondary structure | LLLLLLLLEEEELLLLLHHHHHHHHHHHHHHLLHHHLLLLLLLLLLLLLLLLLLLLLLLL LLLLLEEEEEELLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |