NONHSAT048174
Revision as of 22:06, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT048174 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3416 nt |
Genomic location |
chr15-:89045149..89048564 |
Exon number |
1 |
Exons |
89045149..89048564 |
Genome context |
|
Sequence |
000001 TTTTACTGAC ATGCTGAGAT TCATGCGAAA GGATTGCCTA TCAAACAGCA AACAAGGCGC AACTAAAGGA GAAGTTGACC 000080
000081 CATCCTTTGG AATAAATGGA AGAAGTTTTA ATGTAGTGAG AGACACCAAT TCATGCAGAG CACAGGACTA ATCATTGAGA 000160 000161 TGTGAATCGA TTTGTTAGAT GCTTCCTGCT GACTTTGAAC AGGAGCTGAT TAATTTCCAG GGACATGTGA TTCAATATAG 000240 000241 AAAGAAGTGA AACTAGAGGT TAAGTCGAAT AAGAAACAAA ATCTGAAAAA GGCCAAAAGC GCTTTTTGAA TACGTATATC 000320 000321 TTAAAGGTAC TGGCATTTGT CTTAATCAAC TATGGGAAGG CACACGCGAA ATGACTGTCA TGAAGAAAGA AATTTGTTAT 000400 000401 ACGCATAGGT CCCTAGAAAT TGAAGGCGTG GTATGCATGC AGGGCCATGG GTAAGCACCT GGATTGGTCA GGAGGCAGAG 000480 000481 GGAACAGGCG AAAACATGGA TAAGAGCCTG TGTTGTGGTT TCTGCAGAAA TTAATGTGCC AGACAGCAGG TAAGCAGGTT 000560 000561 TGGGATTGAC TAATTTGAAT TTTGATGGGC CCTGGGGTCT AGGTGCTATC CCTGGTTGTC TGGTACCTGG CCCTGGGGTG 000640 000641 ATTAGGGCTG AGTGTGAGAG CCCTATAAAA AGGTGCTTGA GGTGTGGGCT CTGGATTGGT TGGTTTGCAT ATGAAAGACG 000720 000721 TGTTCTCAGG CAAGTTGTTT GCTATCTCCA GGAATTAGCA AACTCTGGGA GGGGCAGTCC AGGGTCAGTA CAGCCCCAAG 000800 000801 ATGTCAAGTC ATCAGAAAAC AAAAGGCATG GTTAATATAA TATAAAAATG ATTCCAAGCA ATAAGCATTG TCATGGTTTA 000880 000881 ATTTGTTCTT AGAGTGACAG ATTGTGGTAG TCAGCCTCTA AGATGGCCTA CAGTGACCCT ACCTTCTATA TTCATGCCCT 000960 000961 CCCACATCGT ATCATGGTTG ATTGGCATGA CCAATAAAAC ACAGTAGAAG TGATGATGTG CCACTTTCAA GGCTTATTTA 001040 001041 TAAAAGACAT TTCAAGGCTA GGCTTTTGCA CCCCGCCCGC ACCCCTGGAA TCATTCAGCC GCCATATCAC AAGAACACAC 001120 001121 AGGCAAGCTC CTGGAGAGAT CTCCTTGCTG AGGAACTGAG GCTTCCTGCT GATAGCCATG TGAATGAAAT ATCCTGGAAT 001200 001201 CCAGTCCTCC CGCTTCATTC AAGCCTATAG ATGACAGCAA CCTCATGAGA AACTCTGAGC CAGAACTGCC CAGCTAAGCC 001280 001281 ACTCCCAGAT TATTGATTCT CAGAAATTGT GTAAGATAAT AAATGATTTT TTTTTTTTTA AGACAGGGTC TCCTTCTGTT 001360 001361 GCCCAGGCTG GAGTGTGGTG GCATGATCAT GGCTCACTGT AGACCTCCTG GGCTCAAACG ATCCTCCCGT CTCAGCCTCC 001440 001441 TGAGTGGTTG GGACCACAGG TACATGTCAC CATGCCTGGC TAATTGTTTT TAATTTTTTG TAGAAACAGG GCCTTCCTAT 001520 001521 GTTGTCCAGG CTGGTCTCAA ACTCCTAGGT TCAAGCGATT CTCCTACCTT GGCCTTCCAA AGTGCTGAGA TTACAAGCAT 001600 001601 GAGCCACTGC GCCTGGCCAA TAAATGCTTT AAGCTGCTGA ATTTTGGAGG TAATTTGTTG TGTAGCAATA TATAGCCAAC 001680 001681 ACATACATAA ATAAAGGTGT CTTTTTGCAA TATGGCATCC TCTGAAAAAT GCAGTATTCC TATTTTGTAG ATAAGGAAAC 001760 001761 TGACCTTAGA GAGATCAAGC AATTTGCTAA AAGTAACATT ACTGGTTAAT GTCAAGTAAA CTTTAACCTG GCCTATGTCA 001840 001841 GAATTCATTT AAATCTCTGA ATTTATTTAG GTCTAAACTG GTTATTTTAC TGATTTCTAA AAATATTAAT AGGGAAATTT 001920 001921 GATATTTTTG TGTCTTTGTA TCCATCTTCT TCCTTGTAGG TGGATGGCTT AGCAAAGTAT TTTTTATTAA AGGTTGACAA 002000 002001 TATATCCCAC ATAATTTCTC TTTCTCCTGT TTTTTTCTTT AAATTTATTT TATTTTATTT TTTATTTTTT TGAGACAGAG 002080 002081 TCTCAGTTTG TTGCCCAGGC TGGAGTGTAG TGGTGAGATC TCAGCTCTTG CAACCGCCGC CTCCCAGACT TAAGCGATTC 002160 002161 TCATGCCCCA GTCTCCCAAG TAGCTGGGAT TACAGGCATG TGCCACCACT CCCAGCTAAT TTTTATATTT TTAGTAGATA 002240 002241 CTGGGTTTTG CCATGCTGGC CAGGCTGGTC TCCAACTCCT AGCCTCAAGT GATCCACCTG CCTTGGCCTC CCAAAGTGCT 002320 002321 GGGATTACAG GTGTGACCCT GGCCTCTTTC TCCTTCTTAA CACTAGTGTG TTAGTTGACT TGTGTGTTTA TTCATATGTT 002400 002401 ATACATTTAT TGAGGACCTG CTAAGGGCCA GGGACTAGGA ATAGAAGAAT GTGTAAATCA CAGCTCTAAC CTTTGCCTTT 002480 002481 CTAGTCTGGT AATGTCTCTG AATGCCGATC TCTCTCTCTC TTAGAAAGAG GTGCCTTGTC CTCTCTCTCA ACTGTCCCAC 002560 002561 CATCAGTAAG GGAACCAGGA AACCAGTCTT TGAGTATGGA GTTAACAAGA AAGCTGAGTG TTGGGCGGCT TTTTTGTGGA 002640 002641 AGCTCACTGC TTATCCATGT AATGTTTCAT TAATTCTTTG ATGCTGAAGT TTCACCTCCT GCAGGGAGCA TTTGCAGCAC 002720 002721 CCCAGGCGAG TTGTCAGCAG TTGCTGCCTG GCAGTAGCAC ACATTAACTC TAGTGAGCAG AAGTGGAGCT CGAAGGCTCC 002800 002801 CCACACTGCT GCACCTTGAG CTGCTCTTCC TGGCCCAGCC TGTTCTGCTT CCTGGGACCC CAGATCTGGT CTCCAAGTAC 002880 002881 TGTTTCTCTT CTAAGTGTAG TCATTAACTT CCCAGAGTGA GAAGAAGAGA CTAAAAAAAA AGAGAGACAG ACTGTCTCTT 002960 002961 AGTTTTAATT AATTGTTGAA AGAATAGAGA GGGGCCATAT TTCTACTGAA AGAAAGGAGA AGTTGGGGAA TGGGAATATT 003040 003041 CTGAACCGGA ATGAAAAAGT GAATGAAAGG TAATCTTTAG ATTCAGTCTC TTTGCCCTAG TCTTTAAAAG TTTCTGTTGG 003120 003121 GGGTTATTTG CCCTAGTCTT TAAAAGTTTC TGTTGGGGGT TACAAAGTTT GAAATCTGTC TTAAGGAGGG ATGTATTACT 003200 003201 CAAAATAAAT TGCCTCTATC ATTCAGTGTG ATATGATGGA CTTGGAAGGG GCAGGATTAG AGGAGGTGAG GGATAAAAAT 003280 003281 CTACATATTG TGTACAGTGT ATACTACTCC AGTGATAGAT GCACTAAAAT CTCAGCCTTC ACCACAGTTC ATGCATGTAA 003360 003361 CCAAAACCAC TGCTACCCCA AAAGCTGCTG AAATAAAAAG CAACAACAAC AAAAAC |
Predicted Small Protein
Name | NONHSAT048174_smProtein_2501:2680 |
Length | 60 |
Molecular weight | 6673.0118 |
Aromaticity | 0.101694915254 |
Instability index | 49.3576271186 |
Isoelectric point | 9.69659423828 |
Runs | 9 |
Runs residual | 0.0080858342404 |
Runs probability | 0.044044044044 |
Amino acid sequence | MPISLSLRKRCLVLSLNCPTISKGTRKPVFEYGVNKKAECWAAFLWKLTAYPCNVSLIL |
Secondary structure | LLLLLLLLLEEEEEELLLLLLLLLLLLLLEEELLLLHHHHHHHHHHHHHLLLLLLEEEL |
PRMN | - |
PiMo | - |