NONHSAT048304
Revision as of 22:07, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT048304 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
706 nt |
Genomic location |
chr15+:89930389..89931372 |
Exon number |
2 |
Exons |
89930389..89930769,89931048..89931372 |
Genome context |
|
Sequence |
000001 CTCAGAAATT ACATAGCATT TGTCAAGGAT ATAAGAGGGA CTGTGCCACA TCTGGCTGTA TAGAAGGTGG TTCCATATCT 000080
000081 TTAAATAGAG CCCCAGGTCC TTAGCCACCA GAAAGGTTTT CAGGGGAAGT GTGCACCCTC AGCAGCTGCT GCTGGTGGGC 000160 000161 AGGATGGGCA CGCATGGAAC AGGCTTTCCT CTGTGGCCAG GTGAGAAGCA GGTGGTGAGA CACAGAGCAG TGCTGGGCTC 000240 000241 TGCTTCTGAA GCCTCCAACC TTTCCTTCCC TAGGAAGCCC CAGAGAGATT GGTGAGGGTG ATTTCCCAGG AAGACGCAGT 000320 000321 GTGCTCTGAC TTCTGTGACA GTGAGCAACG GGACCAGTGG ATGTCCAGAT GCTGGCAATG AGACATGCTC TGGAGTCAGA 000400 000401 AGACAGCGAA AAGAGAAGCA GAAGCCCCGG TGGCAAGAGT CTGAAGGTGG GTTCCTTCCT GACATGGGCA TTGGGCTGCG 000480 000481 CATGTGTGTT CGCAGTTCTT TCCAGCTGCT GTTCTGACCT CTTTGTGCAG TGTATTTATG TGGCTGTAGA TGGATGGTCC 000560 000561 AAGGTAGATT TAGGTTTTGG AATACTGTTT TTTTTTTCTA CTTCAGGGAG AAAATAACCC AGTTTGGGAA GGACATTTAA 000640 000641 AAGGGGAAAA TATTAGGTAT GATGgcacac ctgcagtccc agctattcgg gaggctaagg ctggag |
Predicted Small Protein
Name | NONHSAT048304_smProtein_368:616 |
Length | 83 |
Molecular weight | 8906.2748 |
Aromaticity | 0.121951219512 |
Instability index | 47.1097560976 |
Isoelectric point | 8.35028076172 |
Runs | 16 |
Runs residual | 0.0592202512934 |
Runs probability | 0.0559695725137 |
Amino acid sequence | MLAMRHALESEDSEKRSRSPGGKSLKVGSFLTWALGCACVFAVLSSCCSDLFVQCIYVAV DGWSKVDLGFGILFFFSTSGRK |
Secondary structure | LHHHHHHLLLLLLLLLLLLLLLLEEEELHHHHHHHHLLEEEEEEHHHHHLLEEEEEEEEE LLEEEEELLLEEEEEEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLL HHHHHHHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooo TTTTTTTTTTTTTTTTTTiiii |