NONHSAT048320
Revision as of 22:07, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT048320 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1353 nt |
Genomic location |
chr15-:90048161..90067265 |
Exon number |
3 |
Exons |
90048161..90049009,90053304..90053354,90066812..90067265 |
Genome context |
|
Sequence |
000001 GGGTGATTCT TTTGGACTAA TTCATGTGGC TGCAATTGGA GCTGGATGAT CTAAATGGTC TCACTCCTAG GTCTGGCTGT 000080
000081 TGATGTTGGC TGTTGGCTGA GCCAGGGGCC GCCAGCAGGC TAGCATGGGC TCTTCACTCA GCAGCAGGGT TCCCCAAGAG 000160 000161 GACAAGCCCA ACACACATGT GCTTTTCAAG CCTGTGATTA TCAGGCTTGA AATACTGCAA CATCTGCTGC AATCAGTAAC 000240 000241 AACCACATAA GAAAGCAATG ACAAGTTATG ATTACTGCTC TGGAGGGAGT GAGCAGGATG CTGTGAGAGA GGGTTACTAT 000320 000321 TCCAAGTGGC ACCTGGGCCA GCAGCATTGG CATCACCTGG GACTTGTGAG AAATCCAGCA TCTCAGGCTC CACTGCAGGT 000400 000401 CTCCTAAATC AGAATCTACA GTTTAACAAG ATCCCCAGCA GATGTGTGTG TAAGCTCAAG AACCTGTTGA GAGGAGCACC 000480 000481 TAGCATAAGA CCTGGCTTGT GACAGATCTG CCACCCTCTA GCTGGGTGAC TTTTAGACAA GTGATCGACC TCTCTGAGCC 000560 000561 AGAGTTTCTA CCTTGTAAAA AAAAAAAAAT CCCTTCCTGC ATGGTCAGCT GTCATGAAAA GGACACATGG TGATGGGCAG 000640 000641 ACAAAGACAA GGCTTAGCTT CGTGTTTGAC TCCTAGGAGC GCCCAGTTCA TGGAGGCTGC TGCTGTCACT AATCTGTTTC 000720 000721 CATCTTCCCC TGGGAATCCT GAGGTTTATC TGTGAGCCTT TGGACTGCTG TATGGACAAC ATACTCTGCA GTAGCATGAA 000800 000801 GAAGTGAGTG AAGACCCTCC CTTGAACCGT TTGCCCTGAA AGAACAGAAG TCACATCTTG ATATCTCAGT GCCTTTACAG 000880 000881 TGCCAGGGAT GGGGTAGGTG CTGAGCGCCT GGTATGTGCT CACCCTATGC TGTACAACAC ACAGAAAGCC CCACAGGGTT 000960 000961 TGAACTGTAA TTAGGTAGAG GGTGTGTGGG ACTCGCCTTG GGTCTCTGAC TTTGGCTTCT GCTCCCGGCC TTGGATAGGC 001040 001041 TGATATTTTC TAGTAGATAT CAGAGACTCC GGTTGATAGC ACCACAATGG CTTTTCTCCC AACTTTTTGT TTTACGTATT 001120 001121 ATCAAGCCAA CAGAGAAGTT GCAAGAATAG CACAATGAAC ATGCATATAC CCTTCACCTG GATTCACCAC TTTTGTTTCA 001200 001201 TTTCTCTCAG TATATATGTT TGTGTGTGTT GGAGACATAT GACATTTTAC CTCGAAACCA GGCATCTCCT AGGAAAAAGA 001280 001281 GCAGCCTCCC ATATAACAAC AATACAATGA TAACCCTTAA AAAACTTTGC ATTAATAAAT CCCATTAGTT AAT |
Predicted Small Protein
Name | NONHSAT048320_smProtein_1154:1309 |
Length | 52 |
Molecular weight | 6192.3161 |
Aromaticity | 0.156862745098 |
Instability index | 62.61 |
Isoelectric point | 9.10052490234 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.0375627728569 |
Amino acid sequence | MNMHIPFTWIHHFCFISLSIYVCVCWRHMTFYLETRHLLGKRAASHITTIQ |
Secondary structure | LLLLLLEEEEELEEEEEEEEEEEEELHHHHHHHHHHHHHHHHHHHHHLLLL |
PRMN | LLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiii |